Os02g0119000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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Os02g0119000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to NBS-LRR disease resistance protein homologue (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121.89 | 0.519 | 6.25 | -0.761 | 0.0452 | -0.966 | 1.3 | 0.0648 | -0.259 | 6.01 | 1003 | 6619 | -- | -- |
| 121.75 | 0.514 | 6.24 | -0.741 | 0.0472 | -1.03 | 1.29 | -- | -0.24 | 5.99 | 1001 | 6597 | -- | -- |
| 124.44 | 0.52 | 6.25 | -0.774 | 0.165 | -1.02 | -- | 0.182 | -0.255 | 1.5 | 1000 | 6609 | -- | -- |
| 124.43 | 0.52 | 6.25 | -0.743 | 0.161 | -1.02 | -- | -- | -0.246 | 1.27 | 1000 | 6605 | -- | -- |
| 125.99 | 0.523 | 6.25 | -0.738 | -- | -1.03 | -- | 0.0389 | -0.246 | -- | 1001 | 6617 | -- | -- |
| 142.02 | 0.559 | 6.24 | -0.485 | 0.0769 | -- | 1.25 | -- | -0.234 | 5.63 | -- | -- | -- | -- |
| 144.46 | 0.563 | 6.25 | -0.483 | 0.169 | -- | -- | -- | -0.241 | 1.55 | -- | -- | -- | -- |
| 126 | 0.523 | 6.25 | -0.733 | -- | -1.03 | -- | -- | -0.245 | -- | 1001 | 6616 | -- | -- |
| 137.63 | 0.546 | 6.23 | -- | 0.15 | -0.805 | -- | -- | -0.169 | 1.18 | 1000 | 6531 | -- | -- |
| 146.2 | 0.565 | 6.25 | -0.476 | -- | -- | -- | -- | -0.238 | -- | -- | -- | -- | -- |
| 150.61 | 0.574 | 6.24 | -- | 0.16 | -- | -- | -- | -0.188 | 1.45 | -- | -- | -- | -- |
| 139.03 | 0.549 | 6.23 | -- | -- | -0.806 | -- | -- | -0.167 | -- | 1000 | 6555 | -- | -- |
| 152.18 | 0.576 | 6.23 | -- | -- | -- | -- | -- | -0.185 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.35 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 2 | 121.37 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 8 | 15 |
| 5 | 121.39 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 11 | 5 |
| 7 | 121.39 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 9 | 121.40 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 12 | 121.42 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 17 | 121.45 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 8 | 15 |
| 18 | 121.46 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 3 |
| 19 | 121.46 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 11 | 5 |
| 21 | 121.46 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 34 | 121.50 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 10 | 13 |
| 50 | 121.55 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 3 |
| 61 | 121.57 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 65 | 121.57 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 81 | 121.60 | atmosphere | 1010 | 4320 | < th | dose independent | sin | 20 | NA |
| 114 | 121.69 | atmosphere | 1010 | 4320 | > th | dose independent | sin | 20 | NA |
| 200 | 121.90 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 222 | 121.97 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 224 | 121.97 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 319 | 122.25 | wind | 7 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 373 | 122.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 432 | 122.60 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 445 | 122.62 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 449 | 122.64 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 468 | 122.68 | humidity | 60 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 504 | 122.77 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 19 | 23 |
| 511 | 122.80 | humidity | 60 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 515 | 122.80 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 19 | 23 |
| 516 | 122.80 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 517 | 122.81 | atmosphere | 1010 | 4320 | < th | dose independent | no | NA | NA |
| 524 | 122.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 9 |
| 530 | 122.83 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 10 | 23 |
| 534 | 122.84 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 539 | 122.84 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 16 |
| 540 | 122.85 | atmosphere | 1010 | 4320 | > th | dose independent | no | NA | NA |
| 555 | 122.86 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 556 | 122.86 | atmosphere | 1010 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 560 | 122.86 | temperature | 30 | 720 | < th | dose dependent | rect. | 13 | 11 |
| 573 | 122.88 | humidity | 60 | 43200 | > th | dose independent | rect. | 14 | 13 |
| 580 | 122.89 | humidity | 60 | 43200 | > th | dose independent | rect. | 15 | 6 |
| 590 | 122.90 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 594 | 122.90 | atmosphere | 1010 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 636 | 122.94 | humidity | 60 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 658 | 122.97 | wind | 9 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 663 | 122.97 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 12 |
| 713 | 123.03 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 735 | 123.06 | humidity | 70 | 14400 | < th | dose dependent | rect. | 19 | 3 |
| 773 | 123.10 | humidity | 70 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 808 | 123.16 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 816 | 123.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 857 | 123.25 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 867 | 123.26 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 11 |
| 894 | 123.29 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 940 | 123.37 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 979 | 123.47 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 2 |