Os02g0118900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Disease resistance protein family protein.
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Os02g0118900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Disease resistance protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 149.84 | 0.575 | 3.1 | 0.46 | 0.192 | 0.445 | -0.215 | 1.16 | 0.514 | 0.703 | 0.3642 | 4919 | -- | -- |
| 150.9 | 0.572 | 3.11 | 0.517 | 0.198 | 0.513 | -0.212 | -- | 0.521 | 0.563 | 0.4066 | 5008 | -- | -- |
| 150.03 | 0.57 | 3.1 | 0.469 | 0.193 | 0.439 | -- | 1.16 | 0.514 | 0.963 | 0.3432 | 4918 | -- | -- |
| 151.07 | 0.572 | 3.11 | 0.531 | 0.201 | 0.495 | -- | -- | 0.523 | 0.924 | 0.2749 | 5173 | -- | -- |
| 152.36 | 0.575 | 3.1 | 0.474 | -- | 0.433 | -- | 1.24 | 0.517 | -- | 0.3465 | 4854 | -- | -- |
| 154.18 | 0.582 | 3.12 | 0.607 | 0.197 | -- | -0.158 | -- | 0.474 | 0.791 | -- | -- | -- | -- |
| 154.28 | 0.582 | 3.12 | 0.613 | 0.198 | -- | -- | -- | 0.474 | 1.01 | -- | -- | -- | -- |
| 153.55 | 0.577 | 3.11 | 0.537 | -- | 0.5 | -- | -- | 0.526 | -- | 0.3517 | 5008 | -- | -- |
| 157.39 | 0.584 | 3.12 | -- | 0.193 | 0.575 | -- | -- | 0.468 | 0.814 | 1 | 5190 | -- | -- |
| 156.71 | 0.585 | 3.12 | 0.62 | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
| 164.18 | 0.599 | 3.14 | -- | 0.208 | -- | -- | -- | 0.406 | 1.14 | -- | -- | -- | -- |
| 158.91 | 0.587 | 3.13 | -- | -- | 0.513 | -- | -- | 0.473 | -- | 1.325 | 6774 | -- | -- |
| 166.86 | 0.603 | 3.14 | -- | -- | -- | -- | -- | 0.409 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.84 | radiation | 1.0 | 90 | < th | dose independent | rect. | 14 | 1 |
| 2 | 144.84 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 14 | 1 |
| 9 | 147.29 | wind | 7.0 | 90 | > th | dose independent | rect. | 14 | 1 |
| 12 | 147.43 | radiation | 1.0 | 10 | < th | dose independent | rect. | 15 | 1 |
| 15 | 147.44 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 31 | 147.90 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 3 |
| 32 | 147.92 | wind | 5.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 33 | 147.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 6 |
| 35 | 148.05 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 10 |
| 39 | 148.12 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 42 | 148.26 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 43 | 148.27 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 6 |
| 47 | 148.33 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 8 |
| 51 | 148.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 5 |
| 52 | 148.37 | radiation | 1.0 | 270 | < th | dose independent | rect. | 8 | 7 |
| 53 | 148.37 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 8 | 7 |
| 103 | 148.64 | radiation | 1.0 | 10 | < th | dose independent | rect. | 7 | 10 |
| 104 | 148.64 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 3 |
| 134 | 148.76 | temperature | 25.0 | 270 | > th | dose independent | rect. | 2 | 19 |
| 172 | 148.95 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 10 |
| 174 | 148.95 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 10 |
| 175 | 148.96 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 10 |
| 185 | 149.03 | humidity | 60.0 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 217 | 149.11 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 15 | 22 |
| 218 | 149.12 | humidity | 90.0 | 270 | > th | dose independent | rect. | 11 | 2 |
| 220 | 149.13 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 231 | 149.19 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 234 | 149.21 | humidity | 60.0 | 90 | < th | dose independent | rect. | 9 | 1 |
| 249 | 149.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 264 | 149.25 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 8 |
| 270 | 149.28 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 14 |
| 273 | 149.29 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 274 | 149.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 277 | 149.29 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 288 | 149.30 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 296 | 149.32 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 351 | 149.37 | humidity | 50.0 | 90 | > th | dose independent | rect. | 13 | 14 |
| 357 | 149.38 | temperature | 25.0 | 90 | < th | dose independent | rect. | 15 | 1 |
| 360 | 149.38 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 17 |
| 361 | 149.38 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 17 |
| 363 | 149.38 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 19 |
| 364 | 149.38 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 19 |
| 366 | 149.38 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 17 |
| 367 | 149.38 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 19 |
| 390 | 149.41 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 416 | 149.43 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 473 | 149.47 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 14 | 1 |
| 478 | 149.48 | humidity | 90.0 | 90 | < th | dose independent | rect. | 24 | 7 |
| 503 | 149.49 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 22 |
| 505 | 149.49 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 3 | 21 |
| 522 | 149.50 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 524 | 149.50 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 22 |
| 569 | 149.52 | temperature | 30.0 | 10 | < th | dose independent | rect. | 24 | 17 |
| 575 | 149.52 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 3 | 20 |
| 604 | 149.53 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 5 | 14 |
| 611 | 149.53 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 687 | 149.57 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 18 | 4 |
| 688 | 149.57 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 735 | 149.60 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 24 | 3 |
| 742 | 149.61 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 772 | 149.63 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 17 | 6 |
| 811 | 149.66 | temperature | 30.0 | 30 | < th | dose independent | rect. | 14 | 13 |
| 822 | 149.66 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 14 |
| 947 | 149.73 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 22 |
| 959 | 149.74 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 987 | 149.76 | humidity | 90.0 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 995 | 149.76 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 16 | NA |
| 1000 | 149.76 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 6 | 11 |