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Os02g0118200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Protein kinase APK1B, chloroplast precursor (EC 2.7.1.-).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0172) R2 : 0.533
β1 : 0.766 (0.0631) R2dD : 0.157 R2D : 0.113
β2 : 0.78 (0.043) R2dC : 0.337 R2C : 0.339
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.27 (0.0368) R2dN8 : 0.0738 R2N8 : 0.0282
σ : 0.324
deviance : 47.82
__
_____
C
peak time of C : 3.25
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.84 0.308 10.2 0.794 0.593 0.478 -0.44 0.198 0.271 5.75 21.82 7 -- --
42.92 0.307 10.2 0.793 0.604 0.488 -0.482 -- 0.271 5.88 20.31 5 -- --
43.24 0.306 10.2 0.789 0.591 0.478 -- 0.194 0.272 5.75 21.78 5 -- --
43.42 0.307 10.2 0.779 0.594 0.492 -- -- 0.27 5.9 20.5 5 -- --
48.46 0.324 10.1 0.698 -- 0.687 -- 0.416 0.35 -- 10.28 336 -- --
47.81 0.324 10.2 0.765 0.781 -- -0.0614 -- 0.269 3.26 -- -- -- --
47.82 0.324 10.2 0.766 0.78 -- -- -- 0.27 3.25 -- -- -- --
46.29 0.317 10.2 0.793 -- 0.756 -- -- 0.313 -- 4.643 439 -- --
59.37 0.359 10.2 -- 0.617 0.475 -- -- 0.187 5.75 20 5 -- --
82.32 0.424 10.2 0.799 -- -- -- -- 0.29 -- -- -- -- --
63.3 0.372 10.2 -- 0.796 -- -- -- 0.184 3.25 -- -- -- --
62.17 0.367 10.2 -- -- 0.778 -- -- 0.229 -- 9.714 421 -- --
99.18 0.465 10.2 -- -- -- -- -- 0.201 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 41.60 radiation 20.0 270 < th dose dependent rect. 24 15
2 41.63 radiation 40.0 90 < th dose dependent rect. 23 23
5 41.67 radiation 20.0 10 < th dose dependent rect. 23 23
11 41.78 atmosphere 1000.0 10 > th dose independent rect. 12 10
17 41.86 radiation 20.0 270 < th dose independent rect. 11 19
18 41.86 radiation 10.0 270 < th dose dependent rect. 23 22
24 41.94 atmosphere 995.0 10 > th dose dependent rect. 13 9
26 41.94 radiation 10.0 270 < th dose dependent rect. 21 22
33 41.99 radiation 20.0 270 < th dose dependent sin 9 NA
35 41.99 radiation 40.0 270 < th dose dependent rect. 11 19
61 42.19 radiation 40.0 10 < th dose dependent rect. 12 19
65 42.21 radiation 10.0 10 < th dose independent rect. 23 23
68 42.22 radiation 10.0 270 < th dose independent rect. 24 17
69 42.22 radiation 1.0 90 > th dose dependent sin 5 NA
70 42.24 atmosphere 1000.0 10 > th dose independent rect. 13 18
71 42.24 radiation 1.0 270 < th dose independent rect. 23 22
75 42.26 radiation 20.0 10 < th dose dependent rect. 10 21
76 42.27 radiation 40.0 10 < th dose independent rect. 12 10
85 42.31 radiation 40.0 90 < th dose dependent sin 6 NA
91 42.32 radiation 40.0 270 < th dose independent rect. 11 19
104 42.36 radiation 30.0 90 < th dose dependent rect. 19 23
105 42.37 humidity 80.0 30 > th dose independent rect. 1 21
112 42.38 temperature 15.0 10 > th dose dependent rect. 7 19
121 42.40 radiation 10.0 270 > th dose independent sin 7 NA
124 42.40 humidity 50.0 270 > th dose dependent rect. 11 19
142 42.46 radiation 20.0 10 < th dose independent rect. 10 21
151 42.47 humidity 60.0 10 > th dose dependent rect. 24 22
154 42.48 radiation 1.0 270 > th dose dependent sin 10 NA
164 42.51 radiation 10.0 270 < th dose independent sin 9 NA
183 42.54 temperature 15.0 10 > th dose dependent rect. 8 16
187 42.55 radiation 10.0 270 > th dose independent rect. 15 22
207 42.61 radiation 10.0 10 > th dose independent rect. 8 8
212 42.61 radiation 30.0 90 < th dose dependent rect. 3 14
230 42.63 humidity 50.0 10 > th dose dependent rect. 13 19
257 42.68 radiation 20.0 10 < th dose dependent sin 1 NA
262 42.69 temperature 25.0 90 < th dose independent rect. 13 18
287 42.73 humidity 50.0 270 > th dose dependent rect. 24 15
317 42.78 radiation 20.0 10 < th dose independent rect. 11 11
324 42.78 radiation 10.0 720 < th dose dependent rect. 9 12
328 42.79 radiation 10.0 270 > th dose independent rect. 17 18
345 42.81 radiation 10.0 270 > th dose independent rect. 6 5
358 42.81 precipitation 0.1 270 < th dose independent rect. 6 17
364 42.81 precipitation 0.1 270 < th dose dependent rect. 6 17
398 42.85 precipitation 0.1 270 < th dose independent rect. 20 14
402 42.85 radiation 1.0 90 > th dose dependent rect. 7 7
405 42.85 precipitation 0.1 270 < th dose dependent rect. 20 14
420 42.87 humidity 60.0 10 > th dose dependent rect. 2 16
428 42.88 radiation 1.0 270 > th dose dependent rect. 6 4
430 42.88 temperature 10.0 270 > th dose dependent rect. 19 16
435 42.89 radiation 10.0 10 > th dose independent rect. 8 6
437 42.89 atmosphere 995.0 270 > th dose independent rect. 13 16
440 42.89 temperature 15.0 270 > th dose independent rect. 11 19
444 42.90 radiation 10.0 10 > th dose independent sin 1 NA
475 42.91 radiation 1.0 270 > th dose dependent rect. 17 18
480 42.92 atmosphere 995.0 270 > th dose independent rect. 10 10
481 42.92 radiation 10.0 10 < th dose independent rect. 8 23
482 42.92 humidity 90.0 10 < th dose dependent sin 4 NA
565 42.97 radiation 40.0 10 < th dose dependent rect. 12 10
582 42.98 radiation 1.0 90 > th dose dependent rect. 17 21
589 42.99 radiation 40.0 10 < th dose independent rect. 12 19
616 43.00 atmosphere 995.0 270 > th dose independent rect. 10 21
655 43.01 radiation 20.0 10 < th dose dependent no NA NA
706 43.03 radiation 10.0 720 < th dose dependent rect. 13 8
718 43.04 atmosphere 1000.0 10 > th dose independent rect. 16 15
737 43.04 radiation 20.0 10 < th dose dependent rect. 13 23
738 43.04 radiation 20.0 10 < th dose dependent rect. 15 23
745 43.05 temperature 10.0 90 > th dose dependent rect. 21 14
756 43.06 radiation 30.0 90 < th dose dependent rect. 3 12
798 43.08 radiation 1.0 90 > th dose dependent rect. 15 23
817 43.10 humidity 90.0 270 < th dose independent rect. 6 18
826 43.11 precipitation 0.1 270 < th dose independent rect. 6 5
832 43.11 precipitation 0.1 270 < th dose dependent rect. 6 5
860 43.13 wind 9.0 270 < th dose independent rect. 6 5
861 43.13 temperature 10.0 270 > th dose independent rect. 6 5
862 43.13 atmosphere 995.0 270 > th dose independent rect. 6 5
863 43.13 atmosphere 1015.0 270 < th dose independent rect. 6 5
872 43.13 temperature 15.0 10 > th dose dependent rect. 8 8
892 43.14 wind 7.0 270 < th dose independent rect. 20 14
969 43.18 precipitation 0.1 270 < th dose independent rect. 4 23
986 43.18 precipitation 0.1 270 < th dose dependent rect. 4 23
999 43.19 temperature 10.0 10 > th dose dependent rect. 22 16