Os02g0117200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0117200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 154.24 | 0.584 | 8.61 | -0.553 | 1.82 | 2.57 | 0.243 | -1.71 | 0.141 | 8 | 15.51 | 16 | 5.88 | 21 |
| 157.68 | 0.585 | 8.59 | -0.388 | 1.86 | 2.59 | 0.279 | -- | 0.19 | 7.9 | 15.29 | 17 | 5.85 | 21.1 |
| 154.29 | 0.579 | 8.61 | -0.546 | 1.82 | 2.57 | -- | -1.69 | 0.146 | 7.99 | 15.3 | 15 | 5.88 | 21 |
| 157.69 | 0.585 | 8.58 | -0.351 | 1.83 | 2.53 | -- | -- | 0.208 | 7.97 | 15.29 | 17 | 5.85 | 21 |
| 304.94 | 0.818 | 8.66 | -0.704 | -- | 2.41 | -- | -2.38 | 0.173 | -- | 17.83 | 4 | 5.58 | 22.4 |
| 245.3 | 0.734 | 8.5 | 0.0578 | 1.79 | -- | 0.365 | -- | 0.596 | 10.8 | -- | -- | -- | -- |
| 245.85 | 0.734 | 8.5 | 0.0722 | 1.79 | -- | -- | -- | 0.597 | 10.7 | -- | -- | -- | -- |
| 305.98 | 0.815 | 8.63 | -0.532 | -- | 3.02 | -- | -- | 0.191 | -- | 13.63 | 2 | 4.47 | 23.8 |
| 160.59 | 0.59 | 8.57 | -- | 1.79 | 2.41 | -- | -- | 0.263 | 8.11 | 15.2 | 12 | 5.9 | 21 |
| 444.32 | 0.985 | 8.55 | 0.0367 | -- | -- | -- | -- | 0.586 | -- | -- | -- | -- | -- |
| 245.99 | 0.734 | 8.5 | -- | 1.79 | -- | -- | -- | 0.589 | 10.7 | -- | -- | -- | -- |
| 312.73 | 0.824 | 8.63 | -- | -- | 2.98 | -- | -- | 0.193 | -- | 13.76 | 2 | 4.47 | 23.8 |
| 444.35 | 0.984 | 8.55 | -- | -- | -- | -- | -- | 0.582 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 159.16 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 2 | 159.63 | temperature | 15 | 90 | > th | dose dependent | rect. | 5 | 21 |
| 23 | 172.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 38 | 174.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 46 | 175.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 47 | 175.50 | temperature | 20 | 90 | > th | dose independent | rect. | 5 | 22 |
| 52 | 175.94 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 22 |
| 66 | 177.35 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 67 | 177.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 20 |
| 76 | 178.32 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 84 | 179.25 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 85 | 179.26 | temperature | 15 | 10 | > th | dose dependent | sin | 5 | NA |
| 86 | 179.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 103 | 180.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 105 | 180.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 113 | 180.63 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 118 | 180.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 127 | 181.23 | temperature | 15 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 148 | 182.19 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 149 | 182.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 160 | 182.65 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 21 |
| 166 | 182.91 | temperature | 30 | 10 | < th | dose dependent | sin | 5 | NA |
| 321 | 188.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 360 | 188.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 14 |
| 371 | 188.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 436 | 189.82 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 484 | 190.79 | temperature | 15 | 90 | > th | dose dependent | rect. | 20 | 15 |
| 531 | 191.70 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 606 | 192.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 641 | 193.30 | radiation | 10 | 4320 | < th | dose dependent | rect. | 3 | 2 |
| 680 | 193.90 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 761 | 195.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 765 | 195.13 | temperature | 15 | 10 | > th | dose dependent | rect. | 20 | 15 |
| 783 | 195.49 | temperature | 20 | 90 | > th | dose independent | rect. | 20 | 15 |
| 787 | 195.61 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 789 | 195.71 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 18 |
| 817 | 196.11 | temperature | 15 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 835 | 196.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 12 |
| 862 | 196.68 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 890 | 197.09 | temperature | 20 | 720 | > th | dose independent | rect. | 20 | 20 |
| 941 | 197.54 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 3 |
| 943 | 197.58 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 13 |
| 949 | 197.65 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 23 |
| 966 | 197.79 | radiation | 30 | 4320 | < th | dose independent | rect. | 1 | 6 |
| 977 | 197.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 1 | 13 |
| 978 | 197.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 984 | 197.89 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 11 |
| 995 | 197.97 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |