Os02g0116900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 15.9 kDa subunit of RNA polymerase II.
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Os02g0116900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 15.9 kDa subunit of RNA polymerase II.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.97 | 0.312 | 10.3 | -0.432 | 0.697 | -0.712 | 0.0959 | 2.21 | -0.376 | 13 | 29.26 | 1457 | -- | -- |
| 46.43 | 0.317 | 10.2 | -0.0609 | 0.765 | -0.808 | 0.0317 | -- | -0.271 | 12.9 | 22.06 | 2539 | -- | -- |
| 44 | 0.309 | 10.3 | -0.428 | 0.701 | -0.711 | -- | 2.21 | -0.376 | 13 | 29.1 | 1434 | -- | -- |
| 45.57 | 0.314 | 10.2 | -0.13 | 0.726 | -1.06 | -- | -- | -0.26 | 13 | 20.75 | 2651 | -- | -- |
| 59 | 0.36 | 10.3 | -0.141 | -- | -1.14 | -- | 0.925 | -0.351 | -- | 29.7 | 1641 | -- | -- |
| 57.89 | 0.357 | 10.2 | 0.288 | 0.679 | -- | 0.13 | -- | -0.0826 | 12.9 | -- | -- | -- | -- |
| 57.96 | 0.357 | 10.2 | 0.293 | 0.678 | -- | -- | -- | -0.082 | 12.9 | -- | -- | -- | -- |
| 60.22 | 0.363 | 10.2 | 0.0139 | -- | -1.14 | -- | -- | -0.309 | -- | 29.7 | 1641 | -- | -- |
| 45.87 | 0.315 | 10.2 | -- | 0.72 | -0.97 | -- | -- | -0.228 | 13 | 20.7 | 2646 | -- | -- |
| 86.66 | 0.435 | 10.2 | 0.268 | -- | -- | -- | -- | -0.0947 | -- | -- | -- | -- | -- |
| 60.22 | 0.363 | 10.2 | -- | 0.674 | -- | -- | -- | -0.115 | 12.9 | -- | -- | -- | -- |
| 58.76 | 0.357 | 10.2 | -- | -- | -1.4 | -- | -- | -0.283 | -- | 74.13 | 7 | -- | -- |
| 88.55 | 0.439 | 10.2 | -- | -- | -- | -- | -- | -0.124 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.89 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 2 | 42.08 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 3 | 42.09 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 8 | 42.12 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 17 | 42.20 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 46 | 42.40 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 7 |
| 133 | 42.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 1 |
| 153 | 42.64 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 236 | 42.80 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 242 | 42.81 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 2 |
| 245 | 42.81 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 11 |
| 265 | 42.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 11 |
| 278 | 42.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 285 | 42.89 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 350 | 42.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 385 | 43.01 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 387 | 43.01 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 407 | 43.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 481 | 43.14 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 532 | 43.19 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 599 | 43.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 606 | 43.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 668 | 43.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 674 | 43.38 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 695 | 43.40 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 13 |
| 756 | 43.47 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 9 |
| 768 | 43.49 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 797 | 43.51 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 17 |
| 888 | 43.63 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 897 | 43.64 | temperature | 20 | 1440 | < th | dose independent | sin | 12 | NA |
| 938 | 43.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 939 | 43.68 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 961 | 43.70 | temperature | 20 | 1440 | > th | dose independent | sin | 12 | NA |
| 977 | 43.71 | humidity | 90 | 14400 | > th | dose independent | sin | 11 | NA |