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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0116300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Oligopeptide transporter OPT superfamily protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0539) R2 : 0.417
β1 : 1.1 (0.197) R2dD : 0.0407 R2D : 0.0433
β2 : 0.637 (0.133) R2dC : 0.0301 R2C : 0.0228
β3 : 4.04 (0.322) R2dE : 0.214 R2E : 0.25
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 9.51 (1.15) R2dD*E : 0.0889 R2D*E : 0.145
γ1 : 0.196 (0.117) R2dN8 : 0.00449 R2N8 : -0.0111
σ : 1
deviance : 464.89
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_____
C
peak time of C : 15
E
wheather : humidity
threshold : 90.51
memory length : 1469
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3
open length of G : 0.0665

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
460.76 1.01 3.31 1.05 0.64 4.02 1.25 9.76 0.174 15.4 90.42 1464 3 0.0905
512.59 1.05 3.35 1.03 0.693 4.34 1.21 -- 0.0446 15.4 90.27 1453 3.44 0.00143
464.89 1 3.31 1.1 0.637 4.04 -- 9.51 0.196 15 90.51 1469 3 0.0665
506.84 1.05 3.31 0.978 0.715 5.2 -- -- 0.197 15.4 90.33 1440 3.44 0.00664
487.31 1.03 3.31 1.05 -- 3.93 -- 9.53 0.17 -- 90.72 1471 3.02 0.0471
737.52 1.27 3.37 1.13 0.601 -- 0.724 -- -0.0479 14.3 -- -- -- --
739.41 1.27 3.36 1.15 0.601 -- -- -- -0.0439 14.2 -- -- -- --
535.29 1.08 3.31 0.963 -- 5.05 -- -- 0.184 -- 90.5 1422 3.43 0.00834
531.28 1.07 3.34 -- 0.71 5.46 -- -- 0.0679 15.5 89.7 1433 3.45 0.00453
760.96 1.29 3.37 1.12 -- -- -- -- -0.0584 -- -- -- -- --
774.12 1.3 3.39 -- 0.579 -- -- -- -0.172 14.1 -- -- -- --
548.13 1.09 3.35 -- -- 6.23 -- -- 0.0407 -- 89 1420 3.61 0.0969
794.19 1.32 3.4 -- -- -- -- -- -0.183 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 480.42 wind 7 4320 < th dose independent rect. 18 3
4 481.76 humidity 90 1440 < th dose dependent rect. 3 1
6 483.50 wind 5 4320 > th dose dependent rect. 19 4
16 487.45 humidity 90 1440 < th dose dependent rect. 23 8
22 489.57 wind 7 4320 > th dose independent rect. 18 3
27 491.53 humidity 80 1440 < th dose independent rect. 22 1
30 492.34 humidity 90 1440 < th dose dependent rect. 2 5
39 495.21 wind 9 4320 > th dose dependent rect. 20 3
41 495.25 wind 9 4320 > th dose dependent rect. 20 6
100 500.23 humidity 70 1440 > th dose dependent rect. 1 6
158 507.13 humidity 70 1440 > th dose dependent rect. 3 1
180 509.24 humidity 70 1440 > th dose dependent rect. 1 3
197 511.22 atmosphere 995 14400 < th dose independent rect. 15 4
207 511.70 atmosphere 995 14400 > th dose independent rect. 15 6
208 511.79 atmosphere 995 14400 > th dose independent rect. 15 4
213 512.13 atmosphere 995 14400 < th dose independent rect. 16 1
242 512.30 atmosphere 995 14400 > th dose independent rect. 8 13
243 512.32 atmosphere 995 14400 > th dose independent rect. 10 11
246 512.39 atmosphere 995 14400 > th dose independent rect. 8 11
248 512.42 atmosphere 995 14400 > th dose independent rect. 10 9
252 512.53 atmosphere 995 14400 > th dose independent rect. 13 8
271 512.61 atmosphere 995 14400 < th dose dependent rect. 16 1
292 512.95 atmosphere 995 14400 < th dose independent rect. 18 1
295 512.95 atmosphere 995 14400 < th dose dependent rect. 18 1
298 512.98 atmosphere 995 14400 > th dose independent rect. 16 1
327 513.64 humidity 90 1440 < th dose dependent rect. 5 1
454 518.09 wind 5 1440 > th dose independent rect. 7 16
467 518.70 humidity 70 1440 > th dose dependent rect. 5 1
491 520.03 humidity 90 1440 < th dose dependent rect. 24 1
540 521.38 atmosphere 995 14400 < th dose dependent rect. 4 12
546 521.56 atmosphere 995 14400 > th dose independent rect. 19 21
563 522.32 wind 5 1440 < th dose independent rect. 7 16
566 522.71 humidity 80 1440 > th dose independent rect. 22 1
617 524.71 atmosphere 995 14400 > th dose independent sin 4 NA
664 525.96 temperature 20 1440 > th dose independent rect. 18 1
689 526.42 atmosphere 995 14400 < th dose independent sin 4 NA
690 526.42 humidity 80 1440 < th dose dependent rect. 21 3
695 526.51 atmosphere 995 14400 < th dose dependent sin 1 NA
697 526.56 atmosphere 995 14400 > th dose independent sin 22 NA
699 526.56 humidity 80 1440 < th dose dependent rect. 22 1
720 527.25 atmosphere 995 14400 < th dose independent sin 22 NA
727 527.57 wind 5 1440 > th dose independent sin 0 NA
803 528.91 wind 5 1440 > th dose independent rect. 7 9
854 530.05 temperature 20 720 < th dose independent rect. 18 1
962 530.77 wind 5 1440 < th dose independent rect. 7 9
978 530.82 atmosphere 995 14400 > th dose independent rect. 14 23
979 530.83 atmosphere 995 14400 > th dose independent no NA NA
988 530.85 atmosphere 995 14400 > th dose independent rect. 10 23
989 530.85 atmosphere 995 14400 > th dose independent rect. 12 23
992 530.86 radiation 1 14400 < th dose dependent rect. 23 3
995 530.89 wind 5 1440 < th dose independent sin 0 NA