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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0114100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.82 (0.0429) R2 : 0.124
β1 : 0.0943 (0.151) R2dD : 0.000906 R2D : 5.85e-05
β2 : -- (--) R2dC : -- R2C : --
β3 : -15.4 (7.19) R2dE : 0.976 R2E : -1.6
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 52 (18.3) R2dD*E : 1.71 R2D*E : -0.854
γ1 : -0.17 (0.0815) R2dN8 : 0.0111 R2N8 : 0.00413
σ : 0.714
deviance : 235.07
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_____
C
peak time of C : --
E
wheather : precipitation
threshold : 0.1369
memory length : 10
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 19
open length of G : 2.29

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.22 0.713 2.82 0.0847 0.0157 -14.9 0.589 51 -0.167 5.77 0.1 10 19 1
353.89 0.876 2.82 0.413 0.292 -9.37 0.241 -- -0.0794 17.6 0.4843 161 22.4 0.000165
235.03 0.714 2.82 0.0905 0.0271 -15.1 -- 51.3 -0.17 2.47 0.1363 10 19 2.21
265.69 0.759 2.88 0.0198 0.0528 0.0133 -- -- -0.176 21.4 0.4605 221 22.6 1.37
235.07 0.714 2.82 0.0943 -- -15.4 -- 52 -0.17 -- 0.1369 10 19 2.29
265.62 0.764 2.88 0.0261 0.0412 -- 0.179 -- -0.176 0.319 -- -- -- --
265.69 0.763 2.88 0.0201 0.0528 -- -- -- -0.176 21.6 -- -- -- --
264.88 0.758 2.88 0.0589 -- -0.303 -- -- -0.197 -- 0.4722 911 23.6 1.53
265.04 0.758 2.89 -- 0.046 -0.17 -- -- -0.191 20.7 0.4524 1578 23.3 1.9
265.86 0.762 2.88 0.0205 -- -- -- -- -0.176 -- -- -- -- --
265.7 0.763 2.88 -- 0.0528 -- -- -- -0.178 21.6 -- -- -- --
259.6 0.75 2.87 -- -- 0.678 -- -- -0.142 -- 0.3779 4300 23.3 1.03
265.87 0.761 2.88 -- -- -- -- -- -0.178 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.22 precipitation 0.1 10 > th dose independent rect. 19 1
11 234.22 precipitation 0.1 10 > th dose dependent rect. 19 1
21 235.57 precipitation 0.1 10 > th dose independent rect. 7 13
25 235.57 precipitation 0.1 10 > th dose dependent rect. 7 13
69 240.54 wind 7.0 30 > th dose dependent rect. 19 1
125 242.50 precipitation 0.1 10 > th dose independent sin 22 NA
126 242.94 precipitation 0.1 10 > th dose dependent sin 22 NA
129 243.09 precipitation 0.1 10 < th dose independent sin 22 NA
130 243.09 precipitation 0.1 10 < th dose dependent sin 22 NA
177 246.62 precipitation 0.1 10 > th dose independent rect. 19 7
181 246.62 precipitation 0.1 10 > th dose dependent rect. 19 7
190 246.75 wind 7.0 30 > th dose independent rect. 19 1
301 250.19 temperature 20.0 90 < th dose independent rect. 2 2
381 250.98 radiation 1.0 270 < th dose independent rect. 9 8
443 252.49 wind 3.0 10 > th dose dependent rect. 19 4
447 252.61 humidity 50.0 1440 < th dose dependent rect. 13 1
506 253.40 atmosphere 1000.0 90 > th dose dependent rect. 2 7
518 253.72 atmosphere 1005.0 10 > th dose dependent rect. 2 2
529 253.91 temperature 20.0 10 < th dose independent rect. 4 1
539 254.05 temperature 25.0 270 < th dose dependent rect. 16 3
540 254.14 humidity 80.0 270 > th dose dependent rect. 16 1
541 254.16 temperature 25.0 270 < th dose independent rect. 16 1
545 254.21 humidity 80.0 270 > th dose independent rect. 16 1
551 254.28 temperature 25.0 270 < th dose independent rect. 16 3
553 254.29 humidity 90.0 90 > th dose independent rect. 18 1
583 254.33 humidity 50.0 1440 < th dose independent rect. 11 3
606 254.35 atmosphere 1000.0 10 > th dose dependent rect. 3 7
627 254.36 radiation 10.0 720 < th dose dependent rect. 11 16
629 254.38 wind 5.0 10 > th dose independent rect. 18 10
687 254.88 temperature 25.0 90 < th dose dependent rect. 2 1
697 255.01 temperature 30.0 270 < th dose dependent rect. 15 16
705 255.11 radiation 10.0 4320 > th dose independent rect. 8 1
711 255.19 radiation 10.0 720 < th dose dependent rect. 11 8
716 255.24 wind 1.0 1440 < th dose dependent rect. 21 1
717 255.24 humidity 50.0 4320 < th dose dependent rect. 15 2
739 255.39 temperature 25.0 10 < th dose dependent rect. 2 2
770 255.59 atmosphere 1015.0 4320 < th dose independent rect. 19 1
782 255.65 temperature 20.0 90 > th dose independent rect. 21 8
786 255.66 temperature 30.0 270 < th dose dependent rect. 23 9
794 255.71 radiation 10.0 4320 < th dose dependent rect. 12 1
795 255.73 atmosphere 1015.0 4320 < th dose independent rect. 14 6
802 255.76 atmosphere 1015.0 4320 > th dose independent rect. 13 7
805 255.77 humidity 50.0 4320 < th dose independent rect. 15 1
814 255.80 atmosphere 1015.0 4320 > th dose dependent rect. 10 10
832 255.85 temperature 25.0 270 < th dose dependent rect. 24 20
857 255.91 humidity 50.0 4320 < th dose dependent rect. 15 20
862 255.94 atmosphere 1015.0 4320 < th dose independent rect. 14 1
881 256.00 wind 5.0 10 < th dose independent rect. 18 9
886 256.01 atmosphere 1015.0 4320 > th dose independent rect. 14 1
893 256.02 humidity 60.0 270 > th dose dependent rect. 16 3
920 256.10 atmosphere 1015.0 4320 > th dose dependent rect. 13 2
925 256.11 radiation 1.0 14400 > th dose independent rect. 13 4
955 256.16 atmosphere 1015.0 14400 > th dose dependent rect. 10 2
967 256.17 atmosphere 1015.0 14400 > th dose dependent rect. 9 4
970 256.17 atmosphere 1015.0 14400 > th dose dependent rect. 8 7
971 256.18 atmosphere 1015.0 14400 > th dose independent sin 22 NA
973 256.18 atmosphere 1015.0 14400 < th dose independent sin 21 NA
976 256.18 radiation 1.0 14400 < th dose independent rect. 13 4
992 256.18 atmosphere 1015.0 14400 > th dose independent rect. 7 14