Os02g0113800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0113800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.66 | 0.18 | 12.9 | 0.454 | 0.184 | 0.206 | 0.138 | 0.958 | 0.119 | 8.61 | 20.8 | 1683 | -- | -- |
| 16.22 | 0.188 | 12.9 | 0.253 | 0.179 | 0.138 | 0.145 | -- | 0.0703 | 8.53 | 24.8 | 3172 | -- | -- |
| 14.72 | 0.179 | 12.9 | 0.459 | 0.183 | 0.204 | -- | 0.957 | 0.12 | 8.62 | 20.83 | 1655 | -- | -- |
| 16.22 | 0.188 | 12.9 | 0.259 | 0.183 | 0.145 | -- | -- | 0.0706 | 8.79 | 24.79 | 2942 | -- | -- |
| 16.49 | 0.189 | 12.9 | 0.481 | -- | 0.175 | -- | 0.891 | 0.121 | -- | 21.49 | 1672 | -- | -- |
| 16.76 | 0.192 | 12.9 | 0.297 | 0.178 | -- | 0.112 | -- | 0.101 | 8.68 | -- | -- | -- | -- |
| 16.8 | 0.192 | 12.9 | 0.301 | 0.178 | -- | -- | -- | 0.101 | 8.66 | -- | -- | -- | -- |
| 17.97 | 0.197 | 12.9 | 0.244 | -- | 0.152 | -- | -- | 0.0559 | -- | 24.58 | 2916 | -- | -- |
| 17.03 | 0.192 | 12.9 | -- | 0.18 | 0.217 | -- | -- | -0.0156 | 8.78 | 24.34 | 47520 | -- | -- |
| 18.59 | 0.201 | 12.9 | 0.301 | -- | -- | -- | -- | 0.102 | -- | -- | -- | -- | -- |
| 19.18 | 0.205 | 12.9 | -- | 0.179 | -- | -- | -- | 0.0671 | 8.54 | -- | -- | -- | -- |
| 18.87 | 0.202 | 12.9 | -- | -- | 0.214 | -- | -- | -0.0133 | -- | 24.33 | 47520 | -- | -- |
| 20.98 | 0.214 | 12.9 | -- | -- | -- | -- | -- | 0.0687 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.16 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 5 | 14.18 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 14 | 14.25 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 24 | 14.30 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 31 | 14.33 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 40 | 14.35 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 48 | 14.38 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 67 | 14.44 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 76 | 14.45 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 95 | 14.49 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 98 | 14.49 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 14 |
| 103 | 14.50 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 114 | 14.52 | wind | 7 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 126 | 14.54 | wind | 7 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 147 | 14.56 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 20 |
| 159 | 14.57 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 10 |
| 178 | 14.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 198 | 14.61 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 203 | 14.61 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 11 |
| 209 | 14.61 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 17 |
| 211 | 14.61 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 219 | 14.62 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 227 | 14.62 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 232 | 14.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 263 | 14.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 323 | 14.66 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 12 |
| 364 | 14.68 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 7 | NA |
| 396 | 14.69 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 7 | NA |
| 397 | 14.69 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 5 | NA |
| 400 | 14.69 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 466 | 14.71 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 492 | 14.72 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 559 | 14.73 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 10 |
| 658 | 14.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 666 | 14.76 | temperature | 20 | 1440 | > th | dose independent | rect. | 13 | 17 |
| 735 | 14.78 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 1 |
| 772 | 14.78 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 10 | 19 |
| 786 | 14.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 807 | 14.79 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 838 | 14.79 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 1 | 23 |
| 857 | 14.79 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 924 | 14.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 12 |
| 945 | 14.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 951 | 14.81 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 991 | 14.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 17 |