Os02g0113300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0113300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.3 | 0.195 | 11.6 | 0.868 | 0.321 | -0.343 | 0.274 | 3.55 | -0.0202 | 8.89 | 26.01 | 814 | -- | -- |
| 19.66 | 0.207 | 11.7 | 0.349 | 0.385 | -0.0858 | -0.0496 | -- | -0.125 | 8.35 | 14.69 | 4194 | -- | -- |
| 17.52 | 0.195 | 11.6 | 0.879 | 0.319 | -0.375 | -- | 3.67 | -0.0246 | 8.78 | 26.39 | 819 | -- | -- |
| 19.51 | 0.206 | 11.7 | 0.395 | 0.365 | -0.131 | -- | -- | -0.0978 | 8.63 | 12.7 | 18812 | -- | -- |
| 21.87 | 0.218 | 11.6 | 0.928 | -- | -0.575 | -- | 3.5 | 0.0222 | -- | 25.08 | 737 | -- | -- |
| 19.8 | 0.209 | 11.7 | 0.3 | 0.372 | -- | -0.0665 | -- | -0.147 | 8.59 | -- | -- | -- | -- |
| 19.81 | 0.208 | 11.7 | 0.298 | 0.372 | -- | -- | -- | -0.147 | 8.61 | -- | -- | -- | -- |
| 25.34 | 0.234 | 11.7 | 0.356 | -- | -0.278 | -- | -- | -0.113 | -- | 24.1 | 669 | -- | -- |
| 20.5 | 0.211 | 11.7 | -- | 0.371 | 0.189 | -- | -- | -0.25 | 8.64 | 21 | 47520 | -- | -- |
| 27.59 | 0.245 | 11.7 | 0.3 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 22.16 | 0.22 | 11.7 | -- | 0.373 | -- | -- | -- | -0.181 | 8.55 | -- | -- | -- | -- |
| 28.4 | 0.248 | 11.7 | -- | -- | 0.184 | -- | -- | -0.246 | -- | 21 | 47520 | -- | -- |
| 29.96 | 0.255 | 11.7 | -- | -- | -- | -- | -- | -0.177 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.25 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 8 |
| 2 | 17.25 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 6 | 17.31 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 8 | 17.31 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 28 | 17.34 | temperature | 25.0 | 720 | > th | dose dependent | sin | 19 | NA |
| 34 | 17.35 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 7 |
| 48 | 17.38 | temperature | 25.0 | 10 | > th | dose independent | rect. | 17 | 7 |
| 52 | 17.39 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 62 | 17.43 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 72 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | no | NA | NA |
| 74 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 5 | 20 |
| 77 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 1 | 22 |
| 89 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 15 | 23 |
| 90 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 91 | 17.44 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 94 | 17.45 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 6 | 17 |
| 113 | 17.45 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 115 | 17.46 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 7 | 3 |
| 116 | 17.46 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 6 | 6 |
| 153 | 17.48 | radiation | 20.0 | 14400 | < th | dose independent | sin | 8 | NA |
| 168 | 17.48 | temperature | 25.0 | 90 | > th | dose independent | rect. | 17 | 10 |
| 196 | 17.49 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 217 | 17.49 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 14 |
| 227 | 17.50 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 235 | 17.51 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 262 | 17.52 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 280 | 17.52 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 281 | 17.52 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 19 | 3 |
| 293 | 17.53 | temperature | 20.0 | 90 | > th | dose dependent | sin | 14 | NA |
| 295 | 17.53 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 17 | 7 |
| 297 | 17.53 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 10 |
| 309 | 17.54 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 310 | 17.54 | wind | 1.0 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 456 | 17.57 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 576 | 17.59 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 578 | 17.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 581 | 17.59 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 6 | 12 |
| 619 | 17.60 | radiation | 10.0 | 14400 | < th | dose independent | no | NA | NA |
| 620 | 17.60 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 804 | 17.61 | atmosphere | 1005.0 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 813 | 17.62 | wind | 1.0 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 814 | 17.62 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 834 | 17.63 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 882 | 17.64 | wind | 1.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 883 | 17.64 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 885 | 17.64 | wind | 1.0 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 900 | 17.64 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 901 | 17.64 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 902 | 17.64 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 5 |
| 912 | 17.65 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 913 | 17.65 | wind | 1.0 | 43200 | > th | dose independent | rect. | 21 | 4 |
| 938 | 17.65 | radiation | 30.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 959 | 17.66 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 22 | 1 |