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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0113200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Cytochrome P450 51 (EC 1.14.13.70) (CYPLI) (P450-LIA1) (Obtusifoliol 14-alpha demethylase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.83 (0.0527) R2 : 0.489
β1 : -1.19 (0.196) R2dD : 0.0456 R2D : -0.0552
β2 : 1.34 (0.137) R2dC : 0.117 R2C : -0.0366
β3 : -1.26 (0.145) R2dE : 0.0997 R2E : 0.0369
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -1.69 (0.114) R2dN8 : 0.346 R2N8 : 0.273
σ : 0.981
deviance : 443.91
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_____
C
peak time of C : 3.26
E
wheather : temperature
threshold : 20.56
memory length : 368
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 17.8
open length of G : 19.2

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
437.77 0.983 5.82 -1.16 1.3 -1.22 1.64 0.219 -1.71 3.66 20.41 315 18.8 18.8
437.25 0.974 5.83 -1.18 1.32 -1.27 1.67 -- -1.73 3.67 20.46 338 18.6 18.8
444.12 0.982 5.83 -1.2 1.35 -1.3 -- 0.237 -1.68 3.45 20.59 355 18.1 19
443.91 0.981 5.83 -1.19 1.34 -1.26 -- -- -1.69 3.26 20.56 368 17.8 19.2
475.85 1.02 5.88 -1.34 -- -2.16 -- 0.541 -1.83 -- 15.6 860 21.2 17.1
498.86 1.05 5.89 -1.5 1.08 -- 0.908 -- -1.9 1.52 -- -- -- --
502.04 1.05 5.89 -1.53 1.08 -- -- -- -1.9 1.34 -- -- -- --
472.03 1.01 5.86 -1.24 -- -2.56 -- -- -1.82 -- 15.77 929 20.9 17.1
480.19 1.02 5.82 -- 1.26 -1.44 -- -- -1.63 3.12 20.5 388 17.3 19.8
573.32 1.12 5.87 -1.48 -- -- -- -- -1.88 -- -- -- -- --
563.39 1.11 5.85 -- 1.05 -- -- -- -1.73 1.28 -- -- -- --
504.31 1.05 5.78 -- -- -3.02 -- -- -1.67 -- 14.67 4013 18.1 17.8
631.38 1.17 5.84 -- -- -- -- -- -1.72 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 439.30 wind 3.0 43200 < th dose dependent rect. 4 3
9 440.15 wind 3.0 43200 < th dose independent rect. 5 3
10 440.26 wind 1.0 43200 > th dose dependent rect. 5 1
13 440.60 wind 3.0 43200 > th dose independent rect. 5 3
14 440.65 wind 3.0 43200 < th dose independent rect. 5 1
19 441.09 wind 3.0 43200 > th dose independent rect. 5 1
32 442.15 humidity 90.0 14400 > th dose dependent rect. 9 1
38 442.53 temperature 20.0 270 > th dose independent rect. 19 19
53 443.66 wind 5.0 43200 < th dose dependent rect. 23 9
54 443.68 wind 3.0 43200 < th dose dependent rect. 1 6
56 443.71 precipitation 0.1 14400 < th dose independent rect. 4 6
57 443.71 precipitation 0.1 14400 < th dose dependent rect. 4 6
60 443.86 wind 9.0 14400 < th dose independent rect. 6 5
70 444.27 humidity 90.0 14400 > th dose dependent rect. 7 3
75 444.39 precipitation 0.1 14400 < th dose independent rect. 4 12
76 444.39 precipitation 0.1 14400 < th dose dependent rect. 4 12
85 444.61 humidity 90.0 14400 > th dose dependent rect. 7 1
88 444.65 precipitation 0.1 14400 > th dose independent rect. 4 12
98 444.84 precipitation 0.1 14400 > th dose independent rect. 4 6
105 445.04 humidity 80.0 14400 > th dose independent rect. 10 1
106 445.04 precipitation 0.1 14400 < th dose independent rect. 4 10
107 445.04 precipitation 0.1 14400 < th dose dependent rect. 4 10
109 445.07 wind 3.0 43200 < th dose independent rect. 1 7
115 445.23 precipitation 0.1 14400 > th dose dependent rect. 5 5
125 445.43 wind 3.0 43200 > th dose independent rect. 1 7
137 445.75 humidity 90.0 14400 > th dose dependent rect. 7 6
156 446.07 humidity 80.0 14400 < th dose independent rect. 10 1
158 446.07 wind 1.0 43200 > th dose dependent rect. 1 7
176 446.27 temperature 20.0 270 > th dose independent rect. 3 11
177 446.30 wind 1.0 43200 > th dose dependent rect. 23 9
188 446.45 humidity 90.0 14400 > th dose dependent rect. 7 9
207 446.74 humidity 70.0 14400 > th dose dependent rect. 10 1
224 447.01 humidity 80.0 43200 < th dose independent rect. 5 2
252 447.27 wind 3.0 43200 < th dose independent rect. 3 9
264 447.33 precipitation 0.1 14400 > th dose dependent rect. 5 11
272 447.51 wind 3.0 43200 < th dose independent rect. 1 11
274 447.54 humidity 80.0 14400 > th dose independent rect. 13 1
296 447.69 wind 3.0 43200 > th dose independent rect. 1 11
320 447.95 precipitation 0.1 14400 < th dose independent rect. 5 3
321 447.95 precipitation 0.1 14400 < th dose dependent rect. 5 3
329 448.01 precipitation 0.1 14400 > th dose independent rect. 5 3
337 448.09 temperature 15.0 270 > th dose dependent rect. 19 18
353 448.26 humidity 80.0 14400 < th dose independent rect. 13 1
378 448.43 precipitation 0.1 14400 < th dose independent rect. 9 1
380 448.43 precipitation 0.1 14400 < th dose dependent rect. 9 1
383 448.47 precipitation 0.1 14400 > th dose dependent rect. 5 3
396 448.57 humidity 80.0 14400 > th dose independent rect. 8 7
402 448.65 humidity 80.0 43200 > th dose independent rect. 5 2
450 448.98 humidity 70.0 14400 > th dose dependent rect. 10 4
472 449.15 wind 5.0 43200 < th dose dependent sin 7 NA
491 449.26 precipitation 0.1 14400 > th dose independent rect. 7 7
495 449.31 precipitation 0.1 14400 < th dose independent rect. 7 3
496 449.31 precipitation 0.1 14400 < th dose dependent rect. 7 3
499 449.34 temperature 15.0 270 > th dose independent rect. 9 14
515 449.43 temperature 30.0 14400 < th dose dependent rect. 13 1
527 449.51 humidity 80.0 14400 < th dose independent rect. 9 5
536 449.55 wind 3.0 43200 < th dose independent sin 7 NA
580 449.79 precipitation 0.1 14400 > th dose independent rect. 9 1
581 449.79 precipitation 0.1 14400 > th dose dependent rect. 9 1
604 449.94 wind 3.0 43200 > th dose independent sin 7 NA
615 449.99 precipitation 0.1 14400 > th dose independent rect. 14 2
616 449.99 precipitation 0.1 14400 > th dose dependent rect. 14 2
624 450.04 temperature 10.0 14400 > th dose dependent rect. 13 1
646 450.19 wind 1.0 43200 > th dose independent rect. 1 1
688 450.43 precipitation 0.1 14400 > th dose independent rect. 7 3
692 450.43 precipitation 0.1 14400 > th dose dependent rect. 7 3
723 450.62 humidity 90.0 14400 > th dose independent rect. 7 1
747 450.74 wind 1.0 43200 > th dose dependent rect. 3 10
759 450.77 wind 1.0 43200 > th dose dependent rect. 1 12
763 450.79 temperature 15.0 270 > th dose dependent rect. 2 11
769 450.84 temperature 30.0 14400 < th dose dependent rect. 9 1
784 450.92 precipitation 0.1 14400 < th dose independent rect. 14 2
785 450.92 precipitation 0.1 14400 < th dose dependent rect. 14 2
803 451.03 temperature 30.0 14400 < th dose dependent rect. 9 5
860 451.30 precipitation 0.1 14400 > th dose independent rect. 7 1
861 451.30 precipitation 0.1 14400 > th dose dependent rect. 7 1
872 451.33 temperature 10.0 14400 > th dose dependent rect. 9 1
899 451.43 wind 9.0 14400 > th dose independent rect. 7 4
901 451.44 wind 1.0 43200 > th dose dependent sin 7 NA
911 451.48 temperature 10.0 14400 > th dose dependent rect. 9 5
918 451.53 precipitation 0.1 14400 < th dose independent sin 3 NA
919 451.53 precipitation 0.1 14400 < th dose dependent sin 3 NA
938 451.62 wind 1.0 43200 < th dose independent rect. 1 1
957 451.70 precipitation 0.1 14400 > th dose independent sin 3 NA