Os02g0111800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0111800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 110.62 | 0.494 | 3.09 | -0.00256 | 0.137 | -0.537 | 0.306 | 0.0216 | 0.0605 | 13.8 | 19.79 | 259 | -- | -- |
| 110.61 | 0.49 | 3.09 | -0.00522 | 0.14 | -0.539 | 0.308 | -- | 0.0596 | 13.7 | 19.6 | 245 | -- | -- |
| 110.92 | 0.491 | 3.08 | 0.045 | 0.144 | -0.558 | -- | 0.254 | 0.0772 | 14.1 | 19.59 | 244 | -- | -- |
| 110.97 | 0.491 | 3.09 | 0.00531 | 0.138 | -0.539 | -- | -- | 0.062 | 14.3 | 19.6 | 260 | -- | -- |
| 111.47 | 0.492 | 3.09 | 0.0314 | -- | -0.466 | -- | 0.28 | 0.0651 | -- | 20.1 | 464 | -- | -- |
| 115.54 | 0.504 | 3.11 | -0.129 | 0.115 | -- | 0.32 | -- | -0.0305 | 8.24 | -- | -- | -- | -- |
| 115.82 | 0.504 | 3.11 | -0.121 | 0.12 | -- | -- | -- | -0.0313 | 7.43 | -- | -- | -- | -- |
| 111.56 | 0.492 | 3.09 | -0.016 | -- | -0.452 | -- | -- | 0.0476 | -- | 19.9 | 415 | -- | -- |
| 110.97 | 0.491 | 3.09 | -- | 0.139 | -0.539 | -- | -- | 0.0613 | 14.3 | 19.59 | 260 | -- | -- |
| 116.59 | 0.505 | 3.11 | -0.119 | -- | -- | -- | -- | -0.0293 | -- | -- | -- | -- | -- |
| 116.21 | 0.504 | 3.11 | -- | 0.119 | -- | -- | -- | -0.0178 | 7.5 | -- | -- | -- | -- |
| 111.56 | 0.492 | 3.09 | -- | -- | -0.455 | -- | -- | 0.0492 | -- | 19.8 | 415 | -- | -- |
| 116.96 | 0.505 | 3.11 | -- | -- | -- | -- | -- | -0.0161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 106.70 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 24 | 4 |
| 3 | 106.73 | humidity | 80.0 | 30 | < th | dose independent | rect. | 24 | 5 |
| 4 | 106.74 | humidity | 80.0 | 30 | < th | dose independent | rect. | 1 | 3 |
| 25 | 107.34 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 24 | 7 |
| 47 | 109.68 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 49 | 109.87 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 12 |
| 52 | 109.91 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 1 | 1 |
| 53 | 109.95 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 1 |
| 54 | 109.95 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 56 | 109.96 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 20 |
| 57 | 110.01 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 22 |
| 58 | 110.02 | temperature | 30.0 | 720 | < th | dose independent | rect. | 10 | 2 |
| 64 | 110.10 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 68 | 110.20 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 74 | 110.24 | temperature | 20.0 | 10 | < th | dose independent | rect. | 2 | 1 |
| 101 | 110.38 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 122 | 110.48 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 12 |
| 127 | 110.50 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 12 |
| 128 | 110.52 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 131 | 110.54 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 132 | 110.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 138 | 110.57 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 141 | 110.58 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 22 | 1 |
| 143 | 110.59 | wind | 3.0 | 90 | < th | dose dependent | rect. | 7 | 16 |
| 144 | 110.59 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 152 | 110.61 | temperature | 20.0 | 720 | > th | dose dependent | sin | 8 | NA |
| 154 | 110.61 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 159 | 110.62 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 165 | 110.63 | temperature | 20.0 | 270 | > th | dose dependent | no | NA | NA |
| 166 | 110.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 175 | 110.66 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 17 |
| 180 | 110.68 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 190 | 110.69 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 219 | 110.76 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 222 | 110.77 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 235 | 110.80 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 12 |
| 241 | 110.81 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 5 |
| 242 | 110.81 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 252 | 110.84 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 20 | 1 |
| 290 | 110.91 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 293 | 110.91 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 302 | 110.93 | wind | 3.0 | 90 | < th | dose independent | rect. | 7 | 16 |
| 335 | 110.97 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 360 | 111.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 10 | 1 |
| 362 | 111.00 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 369 | 111.01 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 12 |
| 405 | 111.07 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 414 | 111.08 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 421 | 111.10 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 5 |
| 446 | 111.13 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 500 | 111.19 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 22 |
| 537 | 111.23 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 9 |
| 549 | 111.24 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 8 | 4 |
| 583 | 111.27 | temperature | 25.0 | 90 | < th | dose independent | rect. | 10 | 2 |
| 599 | 111.28 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 622 | 111.30 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 628 | 111.30 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 21 |
| 663 | 111.34 | temperature | 25.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 676 | 111.34 | wind | 3.0 | 30 | < th | dose dependent | rect. | 6 | 23 |
| 710 | 111.37 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 791 | 111.43 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 5 | 1 |
| 805 | 111.43 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 823 | 111.45 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 9 | 3 |
| 883 | 111.48 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 927 | 111.51 | wind | 3.0 | 720 | > th | dose independent | rect. | 15 | 1 |
| 936 | 111.52 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 8 |
| 937 | 111.52 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 8 |
| 938 | 111.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 19 | 17 |
| 955 | 111.53 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 985 | 111.55 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 999 | 111.56 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 2 |