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Os02g0111600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EGF domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.91 (0.0788) R2 : 0.374
β1 : 5.21 (0.4) R2dD : 0.873 R2D : -0.475
β2 : 0.0442 (0.15) R2dC : 0.000123 R2C : -0.0542
β3 : -6.4 (0.54) R2dE : 1 R2E : -1.35
β4 : 3.15 (0.661) R2dD*C : 0.0315 R2D*C : -0.0396
β5 : -15 (1.24) R2dD*E : 0.584 R2D*E : -0.0109
γ1 : 1.1 (0.156) R2dN8 : 0.149 R2N8 : -0.174
σ : 1.08
deviance : 532.7
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C
peak time of C : 19.3
E
wheather : radiation
threshold : 16.73
memory length : 4320
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18
open length of G : 11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
532.7 1.08 6.91 5.21 0.0442 -6.4 3.15 -15 1.1 19.3 16.73 4320 18 11
682.27 1.22 6.28 5.15 0.0741 -4.02 -2.64 -- 1.5 7.2 7.694 4324 17.6 10.9
553.72 1.1 6.9 5.14 0.0463 -6.55 -- -15.2 1.15 17.6 12.67 4320 18 10.9
655.6 1.19 6.28 4.95 0.156 -3.85 -- -- 1.49 18.7 5.916 4324 17.8 11.6
553.67 1.1 6.9 5.15 -- -6.55 -- -15.4 1.13 -- 12.81 4320 18 10.9
742.81 1.28 6.43 1.63 0.222 -- -2.51 -- 0.704 7.22 -- -- -- --
757.03 1.29 6.43 1.58 0.29 -- -- -- 0.714 10.2 -- -- -- --
632.18 1.17 6.29 3.73 -- -3.56 -- -- 1.48 -- 5.031 4331 17.9 11.6
755.5 1.28 6.21 -- 0.434 -2.06 -- -- 1.29 7.75 1.28 4324 19.4 12.7
762.12 1.29 6.43 1.58 -- -- -- -- 0.713 -- -- -- -- --
823.21 1.34 6.46 -- 0.283 -- -- -- 0.537 9.81 -- -- -- --
585.05 1.13 6.37 -- -- -3.43 -- -- -0.0647 -- 1.748 11568 20.8 11.4
828 1.34 6.47 -- -- -- -- -- 0.538 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 492.93 humidity 90 14400 > th dose dependent rect. 6 1
2 499.89 humidity 90 14400 > th dose dependent rect. 5 10
3 500.15 humidity 90 14400 > th dose independent rect. 6 1
20 509.97 humidity 90 14400 > th dose dependent sin 2 NA
32 514.80 radiation 1 14400 > th dose independent rect. 18 11
34 515.86 humidity 90 14400 < th dose independent rect. 6 1
47 518.19 radiation 40 14400 < th dose dependent rect. 18 8
50 518.36 radiation 40 14400 < th dose dependent rect. 18 10
87 522.60 humidity 90 14400 > th dose independent rect. 1 16
90 522.74 humidity 90 14400 > th dose independent rect. 24 18
113 524.47 humidity 90 14400 < th dose independent rect. 23 18
125 525.53 radiation 1 14400 > th dose independent rect. 18 1
141 526.06 humidity 90 14400 > th dose dependent rect. 5 22
146 526.25 radiation 10 14400 < th dose dependent rect. 18 3
160 526.89 humidity 90 14400 > th dose independent sin 4 NA
224 529.83 radiation 1 14400 > th dose independent rect. 18 14
226 529.96 humidity 90 14400 > th dose dependent no NA NA
228 530.00 radiation 1 14400 < th dose independent rect. 18 11
240 530.44 humidity 90 14400 > th dose dependent rect. 9 23
255 531.05 humidity 90 14400 > th dose dependent rect. 13 23
277 532.02 humidity 90 14400 < th dose independent sin 4 NA
284 532.19 radiation 1 14400 > th dose independent rect. 18 22
290 532.31 radiation 1 14400 > th dose independent rect. 18 18
300 532.50 wind 3 43200 > th dose independent rect. 8 1
302 532.52 wind 7 43200 > th dose dependent rect. 18 1
325 533.36 radiation 1 14400 < th dose independent rect. 18 14
333 533.61 wind 3 43200 < th dose dependent rect. 3 1
337 533.74 wind 9 43200 > th dose independent rect. 18 2
353 534.14 wind 3 43200 < th dose independent rect. 8 1
369 534.77 humidity 90 14400 > th dose independent rect. 10 21
372 534.89 radiation 1 14400 < th dose independent rect. 18 22
386 535.26 radiation 1 14400 < th dose independent rect. 18 19
393 535.39 radiation 1 14400 < th dose independent rect. 18 8
407 535.59 radiation 20 4320 > th dose dependent rect. 16 16
419 535.94 radiation 1 14400 < th dose independent rect. 18 3
429 536.13 humidity 90 14400 > th dose dependent rect. 9 18
437 536.28 wind 9 43200 < th dose independent rect. 18 2
493 537.24 humidity 90 14400 > th dose independent rect. 5 23
510 537.54 humidity 90 14400 > th dose independent no NA NA
523 537.85 humidity 90 14400 < th dose independent rect. 11 21
541 538.15 humidity 90 14400 < th dose independent rect. 6 22
572 538.72 humidity 90 14400 > th dose independent rect. 13 23
613 539.32 radiation 1 14400 > th dose independent rect. 4 12
634 539.48 radiation 1 14400 < th dose independent rect. 23 17
644 539.58 radiation 1 14400 < th dose independent rect. 3 13
677 539.92 radiation 1 14400 > th dose independent sin 4 NA
696 540.04 radiation 1 14400 > th dose independent sin 10 NA
712 540.15 radiation 1 14400 < th dose independent rect. 23 9
715 540.17 radiation 1 14400 < th dose independent sin 5 NA
723 540.20 radiation 1 14400 > th dose independent rect. 4 4
744 540.26 radiation 1 14400 < th dose independent rect. 3 5
747 540.29 humidity 90 14400 < th dose independent no NA NA
754 540.32 radiation 1 14400 > th dose independent rect. 4 9
775 540.43 radiation 1 14400 > th dose independent rect. 14 18
790 540.63 humidity 90 14400 > th dose independent rect. 10 18
804 540.70 radiation 1 14400 > th dose independent rect. 14 22
826 540.90 radiation 1 14400 > th dose independent rect. 14 20
911 541.41 radiation 1 14400 > th dose independent rect. 9 23
925 541.55 radiation 1 14400 > th dose independent rect. 11 21
937 541.57 atmosphere 1005 14400 < th dose independent rect. 17 1
945 541.62 radiation 1 14400 > th dose independent rect. 7 23
977 541.76 humidity 90 14400 < th dose independent rect. 2 23