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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0111500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.98 (0.0334) R2 : 0.466
β1 : -0.567 (0.13) R2dD : 0.027 R2D : -0.0376
β2 : 0.842 (0.078) R2dC : 0.137 R2C : 0.0941
β3 : 0.682 (0.187) R2dE : 0.018 R2E : -0.0473
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 6.56 (0.611) R2dD*E : 0.162 R2D*E : 0.117
γ1 : 0.758 (0.0759) R2dN8 : 0.185 R2N8 : 0.163
σ : 0.613
deviance : 173.33
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_____
C
peak time of C : 0.726
E
wheather : humidity
threshold : 91
memory length : 4399
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.1
open length of G : 2.16

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
172.69 0.617 3.98 -0.553 0.842 0.683 0.39 6.59 0.761 0.663 91 4398 7.1 2.15
200.39 0.659 3.95 -0.105 0.8 1.1 0.257 -- 1.05 0.667 77.91 7158 7.83 2.93
173.33 0.613 3.98 -0.567 0.842 0.682 -- 6.56 0.758 0.726 91 4399 7.1 2.16
196.06 0.652 3.93 -0.188 0.865 1.05 -- -- 1.06 0.967 83.96 7119 9.4 0.0166
217.21 0.686 3.96 -0.487 -- 0.687 -- 6.56 0.785 -- 90.98 4364 7.3 1.98
228.02 0.708 3.98 -0.0488 0.834 -- 0.245 -- 0.795 0.771 -- -- -- --
228.27 0.708 3.98 -0.058 0.834 -- -- -- 0.794 0.8 -- -- -- --
238.49 0.719 3.92 -0.214 -- 1.23 -- -- 1.04 -- 84.28 7134 9.4 0.0166
196.58 0.653 3.91 -- 0.833 1.17 -- -- 1.06 0.812 83.26 7139 9.4 0.0163
271.68 0.77 3.96 -0.0277 -- -- -- -- 0.809 -- -- -- -- --
228.36 0.707 3.98 -- 0.833 -- -- -- 0.8 0.797 -- -- -- --
239.68 0.721 3.91 -- -- 1.19 -- -- 1.06 -- 84.09 7173 9.39 0.014
271.7 0.769 3.96 -- -- -- -- -- 0.812 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 175.90 humidity 90.0 4320 > th dose dependent rect. 7 2
2 176.54 wind 3.0 14400 < th dose dependent rect. 24 3
4 177.01 wind 1.0 14400 > th dose independent rect. 4 4
5 177.50 wind 3.0 14400 < th dose dependent rect. 24 1
6 177.50 wind 5.0 14400 < th dose dependent rect. 22 8
10 177.76 wind 1.0 14400 < th dose independent rect. 4 4
14 177.87 precipitation 0.1 14400 > th dose independent rect. 14 2
15 177.87 precipitation 0.1 14400 > th dose dependent rect. 14 2
30 178.30 wind 1.0 14400 > th dose dependent rect. 22 8
35 178.43 wind 1.0 14400 > th dose dependent rect. 24 2
36 178.49 precipitation 0.1 14400 < th dose independent rect. 14 2
37 178.49 precipitation 0.1 14400 < th dose dependent rect. 14 2
45 178.71 precipitation 0.1 14400 < th dose independent rect. 6 11
47 178.71 precipitation 0.1 14400 < th dose dependent rect. 6 11
50 178.77 precipitation 0.1 14400 > th dose independent rect. 6 11
55 178.86 wind 1.0 14400 < th dose independent rect. 2 8
59 178.90 wind 1.0 14400 > th dose independent rect. 2 8
70 179.12 wind 1.0 14400 < th dose independent rect. 4 6
90 179.38 humidity 80.0 14400 > th dose independent rect. 13 1
119 179.80 wind 1.0 14400 < th dose dependent rect. 2 8
127 180.03 wind 1.0 14400 < th dose dependent rect. 4 4
147 180.30 precipitation 0.1 14400 > th dose dependent rect. 6 11
157 180.43 wind 3.0 14400 < th dose dependent rect. 4 2
214 181.07 humidity 80.0 14400 > th dose dependent rect. 13 1
221 181.15 wind 3.0 14400 < th dose independent rect. 24 2
231 181.26 wind 1.0 14400 > th dose independent rect. 5 1
238 181.36 humidity 80.0 1440 < th dose independent rect. 11 1
291 182.12 wind 3.0 14400 > th dose independent rect. 24 1
296 182.15 humidity 80.0 1440 > th dose independent rect. 11 1
316 182.33 humidity 90.0 4320 > th dose dependent rect. 7 7
339 182.62 humidity 80.0 14400 > th dose dependent rect. 10 5
382 183.20 humidity 80.0 14400 < th dose independent rect. 13 1
394 183.29 wind 1.0 14400 > th dose independent sin 8 NA
403 183.44 humidity 70.0 1440 > th dose dependent rect. 11 1
413 183.49 precipitation 0.1 14400 > th dose independent rect. 17 1
419 183.52 wind 3.0 14400 < th dose independent rect. 21 7
467 183.89 wind 3.0 14400 < th dose independent rect. 23 5
495 184.04 wind 1.0 14400 < th dose independent sin 8 NA
527 184.25 wind 1.0 14400 > th dose dependent rect. 5 1
557 184.48 wind 5.0 14400 < th dose dependent sin 9 NA
568 184.56 humidity 90.0 14400 > th dose dependent rect. 16 1
570 184.57 precipitation 0.1 14400 < th dose independent rect. 17 1
571 184.57 precipitation 0.1 14400 < th dose dependent rect. 17 1
604 184.79 wind 1.0 4320 > th dose independent rect. 17 2
640 185.02 wind 1.0 14400 > th dose dependent sin 9 NA
649 185.10 humidity 80.0 14400 > th dose independent rect. 10 1
709 185.49 precipitation 0.1 14400 < th dose independent sin 1 NA
712 185.49 precipitation 0.1 14400 < th dose dependent sin 1 NA
717 185.51 precipitation 0.1 14400 > th dose independent sin 1 NA
833 186.07 precipitation 0.1 14400 > th dose dependent rect. 18 1
838 186.09 precipitation 0.1 4320 > th dose dependent rect. 1 16
890 186.49 precipitation 0.1 4320 < th dose independent rect. 1 16
891 186.49 precipitation 0.1 4320 < th dose dependent rect. 1 16
904 186.55 precipitation 0.1 4320 > th dose independent rect. 1 16
944 186.81 wind 9.0 14400 < th dose independent rect. 8 3