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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0110000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Lipolytic enzyme, G-D-S-L family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0279) R2 : 0.0438
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.269 (0.0588) R2dN8 : 0.0565 R2N8 : 0.0438
σ : 0.526
deviance : 126.88
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
111.32 0.496 3.21 0.0701 0.103 0.231 0.146 -1.52 0.432 13 19.7 10400 -- --
109.1 0.486 3.28 0.162 0.108 0.887 0.191 -- 0.395 13.5 16.2 22068 -- --
109.75 0.488 3.21 0.136 0.104 0.313 -- -1.36 0.446 12.2 18.18 21935 -- --
109.13 0.487 3.28 0.183 0.0993 0.904 -- -- 0.41 12.8 16.35 22050 -- --
110.1 0.489 3.22 0.0951 -- 0.354 -- -1.3 0.425 -- 17.2 22125 -- --
119.36 0.512 3.32 -0.505 0.109 -- 0.152 -- 0.214 13 -- -- -- --
119.45 0.512 3.32 -0.499 0.109 -- -- -- 0.215 12.7 -- -- -- --
109.8 0.488 3.28 0.191 -- 0.913 -- -- 0.411 -- 16.32 22090 -- --
109.85 0.488 3.27 -- 0.0827 0.848 -- -- 0.422 12.8 16.3 20859 -- --
120.2 0.512 3.32 -0.503 -- -- -- -- 0.213 -- -- -- -- --
126.03 0.525 3.31 -- 0.117 -- -- -- 0.27 12.9 -- -- -- --
110.17 0.489 3.29 -- -- 0.787 -- -- 0.366 -- 15.98 22177 -- --
126.88 0.526 3.31 -- -- -- -- -- 0.269 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 107.47 wind 9.0 43200 < th dose independent rect. 24 1
2 107.89 wind 9.0 43200 > th dose independent rect. 10 1
3 107.94 wind 7.0 43200 > th dose dependent rect. 10 1
4 108.01 wind 9.0 43200 < th dose independent rect. 10 1
5 108.03 radiation 20.0 14400 < th dose dependent rect. 23 6
6 108.22 wind 9.0 43200 > th dose dependent rect. 10 4
8 108.32 humidity 90.0 14400 > th dose dependent rect. 23 1
18 108.50 wind 9.0 43200 < th dose independent rect. 1 10
21 108.52 wind 9.0 43200 > th dose independent rect. 2 10
22 108.52 wind 9.0 43200 > th dose independent rect. 24 12
30 108.57 wind 9.0 43200 > th dose independent rect. 4 8
34 108.58 wind 9.0 43200 > th dose dependent rect. 9 9
46 108.61 wind 7.0 43200 > th dose dependent rect. 5 7
55 108.63 wind 7.0 43200 > th dose dependent rect. 2 10
74 108.68 wind 9.0 43200 > th dose dependent rect. 9 18
93 108.72 wind 9.0 43200 < th dose independent rect. 7 5
105 108.75 wind 9.0 43200 > th dose independent sin 7 NA
109 108.75 radiation 10.0 14400 < th dose independent rect. 23 6
118 108.76 temperature 10.0 43200 > th dose independent rect. 14 6
120 108.76 wind 9.0 43200 < th dose independent rect. 1 7
122 108.76 wind 9.0 43200 > th dose dependent sin 21 NA
128 108.77 humidity 90.0 14400 < th dose independent rect. 22 1
134 108.77 wind 9.0 43200 > th dose dependent rect. 4 11
213 108.83 wind 9.0 43200 < th dose independent rect. 4 4
238 108.84 wind 9.0 43200 < th dose independent sin 7 NA
258 108.84 wind 9.0 43200 > th dose dependent rect. 19 20
284 108.86 wind 9.0 43200 > th dose dependent rect. 17 22
340 108.89 wind 9.0 43200 > th dose dependent no NA NA
363 108.90 wind 1.0 43200 < th dose dependent rect. 18 1
370 108.90 wind 9.0 43200 > th dose dependent rect. 13 23
381 108.92 atmosphere 995.0 43200 < th dose independent rect. 10 1
384 108.92 radiation 10.0 4320 < th dose independent rect. 18 7
387 108.92 atmosphere 995.0 43200 < th dose dependent rect. 10 1
402 108.95 wind 9.0 43200 > th dose independent rect. 19 17
407 108.96 atmosphere 995.0 43200 > th dose independent rect. 11 1
438 109.03 radiation 10.0 4320 < th dose independent rect. 18 9
447 109.05 wind 9.0 43200 < th dose independent rect. 19 17
449 109.05 humidity 90.0 14400 > th dose dependent rect. 6 1
478 109.09 humidity 90.0 14400 > th dose dependent rect. 5 3
481 109.09 radiation 1.0 14400 > th dose dependent rect. 18 11
491 109.10 atmosphere 995.0 43200 < th dose dependent rect. 10 12
533 109.15 humidity 90.0 14400 > th dose independent rect. 22 1
551 109.16 wind 9.0 43200 < th dose independent rect. 7 1
580 109.18 atmosphere 995.0 43200 < th dose dependent sin 22 NA
598 109.19 atmosphere 995.0 43200 < th dose dependent rect. 5 9
610 109.20 wind 1.0 43200 < th dose independent rect. 18 1
683 109.23 precipitation 0.1 43200 < th dose independent rect. 7 1
692 109.23 precipitation 0.1 43200 < th dose dependent rect. 7 1
696 109.24 atmosphere 1015.0 14400 < th dose independent rect. 18 1
697 109.24 radiation 30.0 4320 < th dose independent rect. 7 1
706 109.24 wind 9.0 43200 > th dose independent rect. 24 8
712 109.24 radiation 20.0 4320 > th dose dependent rect. 7 1
713 109.24 wind 7.0 43200 > th dose dependent rect. 5 3
757 109.27 wind 9.0 43200 > th dose independent rect. 5 2
772 109.28 temperature 10.0 43200 > th dose independent rect. 3 4
774 109.28 radiation 40.0 1440 < th dose independent rect. 1 7
787 109.29 wind 9.0 43200 > th dose independent rect. 4 4
804 109.30 wind 9.0 43200 > th dose independent rect. 23 4
807 109.30 wind 9.0 43200 > th dose independent rect. 2 6
814 109.30 humidity 90.0 14400 < th dose independent rect. 22 13
822 109.31 atmosphere 995.0 43200 < th dose independent sin 0 NA
834 109.31 radiation 40.0 4320 < th dose independent rect. 23 10
860 109.33 wind 1.0 43200 > th dose independent rect. 18 1
888 109.34 precipitation 0.1 43200 > th dose dependent rect. 7 1
891 109.34 humidity 80.0 14400 > th dose dependent rect. 22 13
902 109.35 atmosphere 995.0 43200 < th dose independent rect. 7 15
911 109.36 precipitation 0.1 43200 > th dose independent rect. 7 1
915 109.36 humidity 90.0 14400 < th dose independent rect. 21 4
965 109.38 atmosphere 995.0 43200 > th dose independent rect. 6 14
968 109.38 wind 7.0 43200 > th dose dependent rect. 2 1
995 109.39 humidity 90.0 43200 > th dose dependent rect. 11 1