Os02g0108800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0108800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 375.88 | 0.911 | 5.23 | 0.344 | 0.992 | 1.08 | 2.65 | -1.66 | -0.376 | 21.4 | 20.52 | 793 | -- | -- |
| 383.51 | 0.912 | 5.19 | 0.64 | 1.03 | 1.24 | 2.26 | -- | -0.316 | 21.2 | 20.5 | 930 | -- | -- |
| 398.44 | 0.93 | 5.2 | 0.443 | 0.981 | 1.13 | -- | -0.696 | -0.344 | 21.6 | 20.58 | 785 | -- | -- |
| 399.49 | 0.931 | 5.19 | 0.559 | 0.959 | 1.25 | -- | -- | -0.322 | 21.5 | 20.51 | 785 | -- | -- |
| 450.47 | 0.989 | 5.19 | 0.37 | -- | 1.43 | -- | -0.499 | -0.418 | -- | 20.82 | 794 | -- | -- |
| 427.51 | 0.969 | 5.12 | 1.11 | 1.15 | -- | 2.11 | -- | -0.0297 | 21.5 | -- | -- | -- | -- |
| 443.76 | 0.986 | 5.13 | 1.03 | 1.14 | -- | -- | -- | -0.034 | 21.7 | -- | -- | -- | -- |
| 450.98 | 0.989 | 5.17 | 0.462 | -- | 1.56 | -- | -- | -0.369 | -- | 20.38 | 774 | -- | -- |
| 406.74 | 0.939 | 5.19 | -- | 0.957 | 1.44 | -- | -- | -0.377 | 21.3 | 20.5 | 933 | -- | -- |
| 520.5 | 1.07 | 5.1 | 1.04 | -- | -- | -- | -- | -0.036 | -- | -- | -- | -- | -- |
| 471.7 | 1.02 | 5.15 | -- | 1.14 | -- | -- | -- | -0.149 | 21.7 | -- | -- | -- | -- |
| 455.95 | 0.995 | 5.19 | -- | -- | 1.7 | -- | -- | -0.444 | -- | 20.34 | 780 | -- | -- |
| 549 | 1.09 | 5.12 | -- | -- | -- | -- | -- | -0.151 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 366.50 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 2 | 366.85 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 11 |
| 3 | 367.17 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 5 | 367.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 6 | 367.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 7 | 367.70 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 9 | 367.75 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 14 | 367.90 | temperature | 20 | 720 | > th | dose independent | sin | 8 | NA |
| 16 | 367.96 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 16 |
| 31 | 368.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 13 |
| 32 | 368.54 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 47 | 368.90 | temperature | 25 | 720 | < th | dose dependent | sin | 8 | NA |
| 61 | 369.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 66 | 369.36 | temperature | 15 | 720 | > th | dose dependent | sin | 8 | NA |
| 71 | 369.48 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 82 | 369.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 13 |
| 130 | 370.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 4 |
| 219 | 371.84 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 20 |
| 232 | 372.02 | humidity | 90 | 14400 | > th | dose dependent | sin | 17 | NA |
| 255 | 372.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 274 | 372.66 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 21 |
| 461 | 374.51 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 506 | 375.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 518 | 375.11 | humidity | 90 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 525 | 375.15 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 558 | 375.39 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 583 | 375.69 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 23 |
| 610 | 375.86 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 631 | 376.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 7 |
| 655 | 376.13 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 663 | 376.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 704 | 376.43 | humidity | 90 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 709 | 376.49 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 716 | 376.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 2 |
| 732 | 376.63 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 764 | 376.83 | temperature | 20 | 720 | > th | dose independent | rect. | 10 | 23 |
| 770 | 376.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 827 | 377.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 9 | 15 |
| 839 | 377.27 | humidity | 90 | 14400 | > th | dose dependent | sin | 2 | NA |
| 848 | 377.33 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 911 | 377.64 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 913 | 377.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 21 |
| 922 | 377.69 | humidity | 90 | 14400 | > th | dose independent | sin | 17 | NA |
| 924 | 377.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 4 |
| 942 | 377.80 | atmosphere | 995 | 43200 | > th | dose independent | rect. | 22 | 16 |
| 955 | 377.85 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 21 | 13 |