Os02g0108500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os02g0108500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 292.37 | 0.803 | 6.5 | 1.12 | 0.269 | 1.4 | 0.807 | 2.15 | -0.475 | 8.44 | 22.97 | 1468 | -- | -- |
| 302.48 | 0.81 | 6.42 | 1.91 | 0.226 | 1.39 | 0.696 | -- | -0.262 | 9.04 | 23.2 | 1372 | -- | -- |
| 294.43 | 0.799 | 6.5 | 1.14 | 0.268 | 1.39 | -- | 2.16 | -0.478 | 8.49 | 22.99 | 1468 | -- | -- |
| 304.14 | 0.812 | 6.41 | 1.92 | 0.245 | 1.39 | -- | -- | -0.252 | 8.19 | 23.2 | 1372 | -- | -- |
| 292.8 | 0.797 | 6.49 | 1.21 | -- | 1.32 | -- | 2.05 | -0.454 | -- | 22.9 | 772 | -- | -- |
| 390.69 | 0.927 | 6.55 | 1.37 | 0.266 | -- | 0.685 | -- | -0.832 | 9.6 | -- | -- | -- | -- |
| 392.44 | 0.928 | 6.55 | 1.39 | 0.262 | -- | -- | -- | -0.83 | 9.75 | -- | -- | -- | -- |
| 303.68 | 0.812 | 6.43 | 1.89 | -- | 1.35 | -- | -- | -0.285 | -- | 23.1 | 779 | -- | -- |
| 390.9 | 0.921 | 6.51 | -- | 0.131 | 1.06 | -- | -- | -0.596 | 6.49 | 22.61 | 769 | -- | -- |
| 396.53 | 0.93 | 6.55 | 1.39 | -- | -- | -- | -- | -0.83 | -- | -- | -- | -- | -- |
| 443.5 | 0.985 | 6.58 | -- | 0.26 | -- | -- | -- | -0.985 | 9.34 | -- | -- | -- | -- |
| 390.26 | 0.92 | 6.51 | -- | -- | 1.03 | -- | -- | -0.62 | -- | 22.8 | 778 | -- | -- |
| 447.45 | 0.987 | 6.59 | -- | -- | -- | -- | -- | -0.984 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 286.62 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 2 | 286.62 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 3 | 286.62 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |
| 4 | 287.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 5 | 287.42 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 6 | 287.42 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 7 | 289.00 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 17 | 292.65 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 12 |
| 27 | 293.79 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 30 | 294.02 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 40 | 294.45 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 6 |
| 48 | 294.71 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 9 |
| 51 | 294.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 67 | 295.24 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 73 | 295.47 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 75 | 295.62 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 3 |
| 79 | 295.69 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 81 | 295.72 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 12 | NA |
| 89 | 296.05 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 96 | 296.16 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 127 | 297.16 | wind | 5.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 136 | 297.51 | temperature | 25.0 | 720 | < th | dose dependent | sin | 17 | NA |
| 148 | 297.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 150 | 297.74 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 180 | 298.37 | wind | 5.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 203 | 298.67 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 5 |
| 206 | 298.71 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 22 | 1 |
| 218 | 298.98 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 229 | 299.11 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 246 | 299.30 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 21 | 2 |
| 248 | 299.33 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 289 | 299.85 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 360 | 300.60 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 381 | 300.76 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 422 | 301.03 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 451 | 301.28 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 474 | 301.45 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 479 | 301.48 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 6 | 19 |
| 640 | 302.58 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 17 |
| 735 | 303.07 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 753 | 303.16 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 755 | 303.16 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 15 | 16 |
| 842 | 303.62 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |