Os02g0108400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0108400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 99.05 | 0.468 | 7.96 | 3.67 | 1.4 | 0.656 | -0.595 | -2.07 | 0.909 | 21.3 | 47.3 | 1556 | -- | -- |
| 107.31 | 0.482 | 7.96 | 3.42 | 1.41 | 0.545 | -0.709 | -- | 0.912 | 21.4 | 54.04 | 2981 | -- | -- |
| 100.31 | 0.466 | 7.96 | 3.69 | 1.41 | 0.667 | -- | -2.11 | 0.912 | 21.2 | 46.98 | 1558 | -- | -- |
| 108.68 | 0.486 | 7.96 | 3.54 | 1.33 | 0.543 | -- | -- | 0.888 | 21.1 | 51.28 | 1525 | -- | -- |
| 206.05 | 0.672 | 7.94 | 3.46 | -- | 0.639 | -- | -1.33 | 0.873 | -- | 61.94 | 1503 | -- | -- |
| 112.38 | 0.497 | 7.98 | 3.41 | 1.41 | -- | -0.726 | -- | 0.844 | 21.5 | -- | -- | -- | -- |
| 114.3 | 0.501 | 7.98 | 3.43 | 1.41 | -- | -- | -- | 0.846 | 21.4 | -- | -- | -- | -- |
| 211.76 | 0.681 | 7.93 | 3.42 | -- | 0.604 | -- | -- | 0.865 | -- | 61.94 | 1503 | -- | -- |
| 302.71 | 0.81 | 8.01 | -- | 1.42 | 3.1 | -- | -- | 0.71 | 21.6 | 11.56 | 47520 | -- | -- |
| 230.91 | 0.71 | 7.94 | 3.44 | -- | -- | -- | -- | 0.841 | -- | -- | -- | -- | -- |
| 425.03 | 0.964 | 8.06 | -- | 1.41 | -- | -- | -- | 0.463 | 21.6 | -- | -- | -- | -- |
| 422.24 | 0.957 | 7.97 | -- | -- | 3.09 | -- | -- | 0.705 | -- | 13.8 | 47520 | -- | -- |
| 543.4 | 1.09 | 8.03 | -- | -- | -- | -- | -- | 0.459 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 96.08 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 3 | 96.29 | temperature | 25 | 10 | < th | dose dependent | rect. | 5 | 16 |
| 5 | 96.40 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 15 |
| 6 | 96.55 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 10 | 96.80 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 14 | 96.91 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 15 | 96.93 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 16 | 96.93 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 21 | 97.07 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 27 | 97.24 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 28 | 97.25 | temperature | 10 | 10 | > th | dose dependent | sin | 22 | NA |
| 31 | 97.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 48 | 97.57 | humidity | 80 | 1440 | < th | dose independent | rect. | 17 | 2 |
| 62 | 97.79 | humidity | 60 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 69 | 97.91 | temperature | 25 | 10 | < th | dose dependent | sin | 22 | NA |
| 76 | 98.02 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 80 | 98.04 | radiation | 10 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 93 | 98.11 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 11 |
| 97 | 98.13 | humidity | 80 | 1440 | > th | dose independent | rect. | 18 | 1 |
| 100 | 98.16 | humidity | 60 | 1440 | > th | dose dependent | rect. | 10 | 9 |
| 105 | 98.21 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 108 | 98.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 7 |
| 109 | 98.22 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 115 | 98.23 | humidity | 70 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 150 | 98.34 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 4 |
| 152 | 98.35 | humidity | 90 | 30 | < th | dose independent | sin | 22 | NA |
| 166 | 98.43 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 173 | 98.47 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 175 | 98.48 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 14 |
| 183 | 98.50 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 187 | 98.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 14 |
| 190 | 98.52 | radiation | 10 | 1440 | > th | dose independent | rect. | 10 | 8 |
| 205 | 98.53 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 210 | 98.56 | humidity | 70 | 1440 | > th | dose independent | sin | 15 | NA |
| 216 | 98.57 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 221 | 98.59 | humidity | 90 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 226 | 98.60 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 247 | 98.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 254 | 98.64 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 22 |
| 257 | 98.65 | radiation | 10 | 1440 | > th | dose independent | rect. | 13 | 5 |
| 283 | 98.66 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 308 | 98.70 | radiation | 10 | 1440 | > th | dose independent | sin | 17 | NA |
| 310 | 98.71 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 312 | 98.71 | radiation | 10 | 1440 | < th | dose dependent | sin | 16 | NA |
| 349 | 98.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 21 |
| 355 | 98.75 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 377 | 98.78 | humidity | 50 | 1440 | > th | dose dependent | rect. | 10 | 19 |
| 399 | 98.83 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 439 | 98.87 | humidity | 60 | 1440 | > th | dose dependent | sin | 21 | NA |
| 480 | 98.92 | radiation | 1 | 1440 | < th | dose independent | sin | 16 | NA |
| 550 | 99.00 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 592 | 99.03 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 602 | 99.03 | humidity | 70 | 1440 | < th | dose independent | rect. | 14 | 19 |
| 647 | 99.07 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 13 |
| 679 | 99.11 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 786 | 99.17 | humidity | 90 | 1440 | < th | dose dependent | rect. | 10 | 17 |
| 792 | 99.18 | humidity | 90 | 1440 | < th | dose dependent | sin | 19 | NA |
| 801 | 99.19 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 8 |
| 804 | 99.20 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 823 | 99.22 | radiation | 1 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 938 | 99.31 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 974 | 99.34 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 975 | 99.34 | humidity | 80 | 1440 | > th | dose independent | rect. | 9 | 11 |