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Os02g0108000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.96 (0.0296) R2 : 0.655
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.77 (0.0711) R2dC : 0.482 R2C : 0.44
β3 : 1.14 (0.0781) R2dE : 0.168 R2E : 0.148
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.372 (0.0625) R2dN8 : 0.0326 R2N8 : 0.0379
σ : 0.555
deviance : 141.78
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_____
C
peak time of C : 22.7
E
wheather : temperature
threshold : 19.74
memory length : 138
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.72
open length of G : 21.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
133.93 0.544 6.94 0.544 1.78 1.16 0.277 0.741 0.422 22.7 19.7 143 5.62 21.8
136.05 0.543 6.95 0.483 1.8 1.11 0.144 -- 0.411 22.6 19.7 140 5.67 21.8
134.17 0.539 6.94 0.538 1.78 1.15 -- 0.674 0.424 22.7 19.74 142 5.67 21.7
135.97 0.543 6.96 0.48 1.79 1.07 -- -- 0.413 22.6 19.75 137 5.73 21.8
168.36 0.604 6.86 0.791 -- 1.49 -- 0.66 0.552 -- 10.67 801 5.19 20.9
177.81 0.625 6.93 0.77 1.85 -- 0.234 -- 0.55 21.4 -- -- -- --
178.01 0.625 6.93 0.762 1.85 -- -- -- 0.549 21.4 -- -- -- --
161.73 0.592 6.87 0.769 -- 1.61 -- -- 0.584 -- 9.464 830 5.58 18.9
141.78 0.555 6.96 -- 1.77 1.14 -- -- 0.372 22.7 19.74 138 5.72 21.8
378.77 0.909 6.88 0.773 -- -- -- -- 0.543 -- -- -- -- --
193.31 0.65 6.95 -- 1.85 -- -- -- 0.465 21.5 -- -- -- --
178.22 0.622 6.88 -- -- 1.59 -- -- 0.571 -- 9.165 828 5.63 19
394.54 0.927 6.9 -- -- -- -- -- 0.458 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.82 temperature 20.0 90 > th dose independent rect. 6 22
4 141.20 temperature 20.0 270 > th dose independent rect. 6 19
10 143.69 temperature 20.0 270 > th dose independent rect. 19 15
23 146.91 temperature 20.0 270 > th dose independent rect. 17 8
26 147.18 humidity 80.0 720 < th dose dependent rect. 19 8
39 147.86 temperature 25.0 270 < th dose independent rect. 1 4
63 149.40 temperature 10.0 10 > th dose dependent rect. 7 21
71 149.81 wind 1.0 90 < th dose dependent rect. 4 1
76 149.91 wind 1.0 90 < th dose independent rect. 4 1
78 149.97 radiation 1.0 30 > th dose independent rect. 12 19
86 150.31 temperature 10.0 270 > th dose dependent rect. 19 15
88 150.45 wind 1.0 270 > th dose independent rect. 2 2
105 151.55 temperature 25.0 90 < th dose independent rect. 4 1
106 151.60 humidity 90.0 90 > th dose dependent rect. 4 1
107 151.61 temperature 30.0 270 < th dose dependent rect. 1 4
108 151.64 temperature 30.0 90 < th dose dependent rect. 3 4
113 151.69 wind 5.0 30 < th dose dependent rect. 4 3
124 151.99 temperature 20.0 30 > th dose independent rect. 7 5
126 152.03 temperature 10.0 270 > th dose dependent rect. 17 8
134 152.16 temperature 20.0 270 > th dose independent rect. 6 4
141 152.30 radiation 1.0 90 > th dose independent rect. 5 1
165 152.63 wind 5.0 90 < th dose independent rect. 3 4
179 152.74 temperature 10.0 10 > th dose dependent rect. 7 5
180 152.74 temperature 30.0 270 < th dose dependent rect. 23 7
181 152.78 radiation 10.0 10 < th dose independent rect. 5 3
184 152.84 temperature 20.0 10 > th dose independent rect. 22 14
186 152.85 temperature 10.0 10 > th dose dependent rect. 5 2
192 152.92 wind 5.0 270 < th dose independent rect. 1 5
196 152.93 radiation 1.0 10 > th dose independent rect. 5 2
241 153.22 radiation 10.0 90 < th dose independent rect. 4 3
248 153.29 precipitation 0.1 30 < th dose independent rect. 4 3
250 153.29 precipitation 0.1 30 < th dose dependent rect. 4 3
253 153.34 atmosphere 1015.0 30 < th dose dependent rect. 4 3
258 153.37 temperature 10.0 30 > th dose independent rect. 4 3
261 153.37 humidity 50.0 30 > th dose independent rect. 4 3
264 153.37 atmosphere 995.0 30 > th dose independent rect. 4 3
265 153.37 atmosphere 1015.0 30 < th dose independent rect. 4 3
275 153.44 temperature 20.0 270 > th dose independent rect. 7 2
301 153.55 humidity 50.0 30 > th dose dependent rect. 4 3
304 153.57 temperature 10.0 90 > th dose dependent rect. 4 2
329 153.81 radiation 20.0 90 < th dose dependent rect. 4 3
333 153.82 wind 9.0 30 < th dose independent rect. 7 21
342 153.88 humidity 80.0 720 < th dose independent rect. 19 3
353 153.94 radiation 1.0 30 > th dose independent rect. 16 15
377 154.08 humidity 90.0 90 > th dose independent rect. 4 1
400 154.14 radiation 40.0 10 < th dose dependent rect. 5 2
421 154.23 temperature 15.0 270 > th dose dependent rect. 7 1
428 154.29 precipitation 0.1 10 < th dose independent rect. 12 19
430 154.29 precipitation 0.1 10 < th dose dependent rect. 12 19
433 154.32 precipitation 0.1 270 < th dose independent rect. 1 5
435 154.32 precipitation 0.1 270 < th dose dependent rect. 1 5
493 154.59 radiation 1.0 10 < th dose dependent sin 12 NA
495 154.61 humidity 80.0 720 < th dose independent rect. 19 6
500 154.62 humidity 80.0 720 > th dose independent rect. 19 7
524 154.70 precipitation 0.1 270 < th dose independent rect. 1 14
525 154.70 precipitation 0.1 270 < th dose dependent rect. 1 14
526 154.72 atmosphere 1015.0 30 < th dose independent rect. 7 21
531 154.74 temperature 20.0 270 > th dose independent rect. 21 4
541 154.79 temperature 10.0 30 > th dose dependent rect. 19 9
546 154.85 wind 1.0 30 > th dose independent rect. 7 22
550 154.86 wind 1.0 270 > th dose independent rect. 1 5
552 154.86 wind 9.0 10 < th dose independent rect. 12 19
558 154.88 humidity 80.0 720 < th dose independent rect. 19 8
564 154.90 atmosphere 995.0 30 > th dose independent rect. 7 21
575 154.94 radiation 10.0 270 < th dose dependent rect. 2 3
600 155.00 radiation 40.0 30 < th dose independent rect. 12 19
604 155.02 temperature 30.0 720 > th dose dependent rect. 18 1
633 155.08 radiation 10.0 10 < th dose independent rect. 4 8
638 155.14 humidity 90.0 10 < th dose independent rect. 7 5
639 155.15 temperature 20.0 90 > th dose independent rect. 21 7
643 155.18 radiation 10.0 270 < th dose independent rect. 1 5
647 155.19 wind 9.0 10 < th dose independent rect. 7 5
654 155.22 temperature 10.0 270 > th dose dependent rect. 6 4
669 155.26 atmosphere 1010.0 270 < th dose independent rect. 1 5
687 155.35 precipitation 0.1 10 < th dose independent rect. 7 5
690 155.35 precipitation 0.1 10 < th dose dependent rect. 7 5
702 155.40 radiation 40.0 270 < th dose independent rect. 6 4
703 155.40 temperature 10.0 10 > th dose independent rect. 7 5
705 155.40 atmosphere 995.0 10 > th dose independent rect. 7 5
706 155.40 atmosphere 1015.0 10 < th dose independent rect. 7 5
708 155.40 temperature 10.0 10 > th dose independent rect. 12 19
714 155.42 temperature 10.0 270 > th dose independent rect. 1 5
717 155.42 humidity 50.0 270 > th dose independent rect. 1 5
720 155.42 atmosphere 995.0 270 > th dose independent rect. 1 5
728 155.43 radiation 10.0 10 > th dose independent sin 5 NA
733 155.44 precipitation 0.1 90 < th dose independent rect. 7 20
736 155.44 precipitation 0.1 90 < th dose dependent rect. 7 20
741 155.46 radiation 40.0 270 < th dose dependent rect. 1 5
752 155.50 precipitation 0.1 270 < th dose independent rect. 5 21
753 155.50 precipitation 0.1 270 < th dose dependent rect. 5 21
784 155.59 temperature 20.0 270 < th dose dependent rect. 24 4
786 155.60 radiation 1.0 30 > th dose independent rect. 7 5
790 155.63 radiation 1.0 10 < th dose independent sin 12 NA
805 155.69 radiation 10.0 10 < th dose independent sin 5 NA
809 155.70 radiation 10.0 10 < th dose independent rect. 4 14
832 155.75 temperature 10.0 1440 > th dose independent rect. 8 5
835 155.75 atmosphere 995.0 1440 > th dose independent rect. 8 5
838 155.75 temperature 10.0 1440 > th dose independent rect. 13 19
859 155.81 wind 9.0 270 < th dose independent rect. 10 20
898 155.92 temperature 20.0 10 < th dose dependent rect. 24 9
901 155.93 precipitation 0.1 270 < th dose independent rect. 10 20
903 155.93 precipitation 0.1 270 < th dose dependent rect. 10 20
911 155.96 wind 7.0 270 < th dose independent rect. 6 4
912 155.96 atmosphere 1015.0 10 < th dose dependent rect. 7 5
913 155.96 temperature 30.0 10 < th dose dependent rect. 2 6
944 156.04 temperature 15.0 10 > th dose dependent rect. 22 14
949 156.06 wind 9.0 90 < th dose dependent rect. 6 22
954 156.08 radiation 40.0 270 < th dose independent rect. 7 2
992 156.16 temperature 10.0 270 > th dose independent rect. 15 10
993 156.16 temperature 10.0 270 > th dose independent rect. 1 14
994 156.16 atmosphere 1015.0 270 < th dose independent rect. 1 14
995 156.17 precipitation 0.1 270 < th dose independent rect. 6 4
1000 156.17 precipitation 0.1 270 < th dose dependent rect. 6 4