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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0107800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.94 (0.0437) R2 : 0.203
β1 : 0.131 (0.16) R2dD : 0.00146 R2D : 0.00276
β2 : -- (--) R2dC : -- R2C : --
β3 : 6.06 (0.633) R2dE : 0.232 R2E : -0.00517
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 15.3 (1.68) R2dD*E : 0.205 R2D*E : -0.0299
γ1 : -0.0167 (0.0935) R2dN8 : 4.29e-05 R2N8 : 0.000404
σ : 0.817
deviance : 307.53
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 77.91
memory length : 180
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.8
open length of G : 11

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.26 0.818 2.94 0.123 0.0515 5.8 -1.28 14.8 -0.0128 4.18 78.16 178 21.8 11
352.63 0.875 2.95 0.183 0.057 2.46 -0.93 -- -0.0141 1.67 81.22 144 21.8 11.3
307.43 0.817 2.94 0.14 0.0512 5.99 -- 15.1 -0.0103 5.32 77.95 180 21.8 11
354.48 0.877 2.94 0.224 0.0177 2.42 -- -- -0.0233 1.41 82.51 176 21.8 11
307.53 0.817 2.94 0.131 -- 6.06 -- 15.3 -0.0167 -- 77.91 180 21.8 11
381.13 0.915 2.94 0.177 0.138 -- 0.731 -- -0.0519 10.5 -- -- -- --
381.98 0.915 2.94 0.201 0.215 -- -- -- -0.0539 7.35 -- -- -- --
354.41 0.877 2.93 0.199 -- 2.36 -- -- -0.0127 -- 82.44 176 21.9 10.7
355.41 0.878 2.94 -- 0.0608 2.46 -- -- -0.0419 5.47 82.21 176 21.9 10.9
384.44 0.916 2.94 0.204 -- -- -- -- -0.0504 -- -- -- -- --
383.04 0.916 2.94 -- 0.217 -- -- -- -0.0762 7.29 -- -- -- --
355.49 0.878 2.94 -- -- 2.38 -- -- -0.029 -- 82.37 176 21.9 10.8
385.54 0.916 2.95 -- -- -- -- -- -0.073 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 323.18 humidity 80 90 < th dose dependent rect. 22 11
3 326.97 humidity 70 90 < th dose independent rect. 8 1
80 337.01 humidity 80 90 < th dose dependent rect. 8 1
123 340.06 humidity 90 10 < th dose dependent rect. 13 22
177 342.13 humidity 80 90 < th dose independent rect. 12 22
206 342.93 humidity 80 90 < th dose dependent rect. 7 3
238 344.50 wind 7 1440 < th dose independent rect. 18 16
247 344.69 wind 5 1440 > th dose dependent rect. 19 15
269 345.52 atmosphere 1005 14400 > th dose independent rect. 23 1
272 345.80 atmosphere 1005 14400 < th dose independent rect. 23 2
275 345.96 wind 5 1440 > th dose dependent sin 12 NA
307 346.79 wind 7 1440 < th dose independent sin 11 NA
320 347.04 wind 5 1440 > th dose dependent rect. 19 4
322 347.07 wind 5 1440 < th dose independent rect. 20 1
332 347.24 wind 5 1440 > th dose independent rect. 19 2
346 347.42 wind 7 1440 > th dose independent rect. 18 16
347 347.42 wind 5 1440 > th dose dependent rect. 16 18
348 347.47 wind 3 90 > th dose dependent rect. 8 1
359 347.57 wind 1 30 > th dose dependent rect. 1 9
405 348.22 wind 5 90 > th dose independent rect. 8 1
421 348.44 wind 7 90 > th dose independent rect. 1 8
424 348.45 wind 7 1440 > th dose independent sin 11 NA
427 348.48 wind 7 90 > th dose dependent rect. 1 8
481 348.86 atmosphere 1000 4320 < th dose independent rect. 7 1
486 348.89 atmosphere 1000 4320 > th dose independent rect. 7 1
500 348.97 wind 7 90 > th dose dependent rect. 8 1
566 349.45 atmosphere 1005 14400 > th dose independent sin 11 NA
595 349.63 temperature 20 720 > th dose independent rect. 10 9
602 349.70 atmosphere 1005 14400 < th dose independent sin 11 NA
702 350.31 atmosphere 1005 14400 > th dose independent rect. 3 1
726 350.51 wind 5 1440 > th dose dependent rect. 15 12
754 350.70 wind 5 1440 > th dose dependent rect. 18 10
757 350.71 wind 1 90 > th dose dependent rect. 4 6
774 350.77 atmosphere 1005 14400 < th dose independent rect. 3 1
796 350.86 wind 5 1440 > th dose independent rect. 15 19
833 351.06 wind 5 1440 > th dose independent sin 14 NA
881 351.26 radiation 40 90 > th dose dependent rect. 8 1
906 351.30 wind 7 1440 < th dose independent rect. 18 12
912 351.32 humidity 80 90 < th dose independent sin 9 NA
940 351.46 wind 3 30 > th dose independent rect. 24 10
992 351.67 wind 7 1440 < th dose independent rect. 18 8