Os02g0107600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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Os02g0107600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1677, Oryza sativa family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.15 | 0.282 | 8.73 | 0.707 | 0.63 | 0.464 | -0.419 | 0.657 | 0.189 | 0.371 | 15.8 | 4017 | -- | -- |
| 36.36 | 0.281 | 8.75 | 0.562 | 0.639 | 0.429 | -0.363 | -- | 0.145 | 0.452 | 17.37 | 3444 | -- | -- |
| 36.77 | 0.282 | 8.73 | 0.709 | 0.643 | 0.473 | -- | 0.56 | 0.182 | 0.489 | 15.1 | 3354 | -- | -- |
| 36.96 | 0.283 | 8.75 | 0.585 | 0.643 | 0.419 | -- | -- | 0.147 | 0.508 | 17.8 | 3399 | -- | -- |
| 58.19 | 0.355 | 8.75 | 0.556 | -- | 0.814 | -- | -0.0281 | 0.113 | -- | 13 | 956 | -- | -- |
| 40.31 | 0.298 | 8.73 | 0.753 | 0.667 | -- | -0.369 | -- | 0.235 | 0.434 | -- | -- | -- | -- |
| 40.9 | 0.299 | 8.73 | 0.767 | 0.668 | -- | -- | -- | 0.237 | 0.468 | -- | -- | -- | -- |
| 58.19 | 0.355 | 8.75 | 0.561 | -- | 0.814 | -- | -- | 0.114 | -- | 13.01 | 956 | -- | -- |
| 39.03 | 0.291 | 8.8 | -- | 0.654 | 0.668 | -- | -- | -0.0497 | 0.456 | 11.45 | 47520 | -- | -- |
| 68.94 | 0.388 | 8.72 | 0.79 | -- | -- | -- | -- | 0.248 | -- | -- | -- | -- | -- |
| 56.41 | 0.351 | 8.75 | -- | 0.68 | -- | -- | -- | 0.151 | 0.525 | -- | -- | -- | -- |
| 65.53 | 0.377 | 8.77 | -- | -- | 1.04 | -- | -- | 0.0213 | -- | 10.71 | 973 | -- | -- |
| 85.41 | 0.431 | 8.74 | -- | -- | -- | -- | -- | 0.16 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.09 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 33 | 33.11 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 55 | 33.28 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 64 | 33.48 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 82 | 33.73 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 20 | 8 |
| 99 | 33.90 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 17 | 15 |
| 108 | 33.96 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 117 | 34.05 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 118 | 34.07 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 127 | 34.16 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 17 | 15 |
| 143 | 34.24 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 175 | 34.34 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 187 | 34.39 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 193 | 34.42 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 200 | 34.44 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 217 | 34.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 240 | 34.58 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 244 | 34.59 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 20 | 8 |
| 246 | 34.60 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 300 | 34.82 | radiation | 1.0 | 270 | < th | dose independent | rect. | 2 | 12 |
| 313 | 34.84 | humidity | 80.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 314 | 34.84 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 320 | 34.85 | radiation | 20.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 341 | 34.87 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 343 | 34.87 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 361 | 34.91 | humidity | 80.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 367 | 34.93 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 369 | 34.93 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 384 | 34.97 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 389 | 34.98 | atmosphere | 1010.0 | 10 | < th | dose dependent | rect. | 14 | 8 |
| 438 | 35.07 | temperature | 15.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 440 | 35.07 | temperature | 20.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 441 | 35.07 | radiation | 1.0 | 270 | < th | dose dependent | sin | 3 | NA |
| 450 | 35.08 | wind | 9.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 451 | 35.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 453 | 35.08 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 454 | 35.08 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 457 | 35.08 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 458 | 35.08 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 463 | 35.08 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 464 | 35.08 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 465 | 35.08 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 468 | 35.08 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 479 | 35.10 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 16 |
| 481 | 35.10 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 482 | 35.10 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 4 |
| 487 | 35.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 488 | 35.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 490 | 35.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 4 |
| 491 | 35.11 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 494 | 35.11 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 4 |
| 501 | 35.11 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 20 |
| 505 | 35.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 506 | 35.12 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 2 |
| 536 | 35.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 547 | 35.17 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 9 |
| 549 | 35.17 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 12 |
| 550 | 35.17 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 562 | 35.18 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 569 | 35.19 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 571 | 35.19 | temperature | 20.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 572 | 35.19 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 582 | 35.20 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 591 | 35.21 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 4 |
| 593 | 35.21 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 598 | 35.21 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 606 | 35.23 | radiation | 1.0 | 270 | < th | dose independent | sin | 3 | NA |
| 633 | 35.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 635 | 35.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 656 | 35.29 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 662 | 35.30 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 666 | 35.30 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 673 | 35.31 | radiation | 1.0 | 270 | > th | dose independent | sin | 3 | NA |
| 674 | 35.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 676 | 35.31 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 677 | 35.31 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 679 | 35.31 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 680 | 35.31 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 684 | 35.31 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 701 | 35.32 | wind | 9.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 702 | 35.32 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 17 |
| 715 | 35.33 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 725 | 35.34 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 20 |
| 731 | 35.34 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 732 | 35.34 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 735 | 35.35 | radiation | 1.0 | 270 | > th | dose independent | rect. | 6 | 8 |
| 750 | 35.36 | atmosphere | 1010.0 | 270 | < th | dose dependent | sin | 16 | NA |
| 765 | 35.38 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 816 | 35.39 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 829 | 35.41 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 836 | 35.41 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 839 | 35.41 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 11 | 16 |
| 845 | 35.42 | wind | 5.0 | 30 | < th | dose independent | rect. | 20 | 8 |
| 875 | 35.44 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 13 | 17 |
| 887 | 35.45 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 9 |
| 896 | 35.45 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 19 |
| 898 | 35.46 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 969 | 35.50 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 17 |
| 977 | 35.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 18 |
| 978 | 35.51 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 22 |
| 979 | 35.51 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 4 |
| 985 | 35.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 18 |
| 987 | 35.51 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 22 |