Os02g0106900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os02g0106900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 194.24 | 0.655 | 8.75 | -2.09 | 0.92 | 2.52 | 1.6 | -6.14 | 0.0482 | 1.94 | 26.66 | 1229 | -- | -- |
| 203.8 | 0.665 | 8.61 | -0.716 | 0.843 | 1.97 | 1.7 | -- | 0.2 | 1.93 | 25.94 | 1200 | -- | -- |
| 203.69 | 0.665 | 8.74 | -1.95 | 0.923 | 2.47 | -- | -5.32 | 0.0793 | 2.09 | 26.73 | 1230 | -- | -- |
| 208.83 | 0.673 | 8.58 | -0.71 | 0.907 | 1.94 | -- | -- | 0.327 | 2.23 | 26.7 | 1188 | -- | -- |
| 248.75 | 0.735 | 8.76 | -2.01 | -- | 2.81 | -- | -5.07 | -0.0997 | -- | 25.49 | 1174 | -- | -- |
| 342.5 | 0.868 | 8.57 | -0.0831 | 1.24 | -- | 1.87 | -- | 0.374 | 1.72 | -- | -- | -- | -- |
| 356.23 | 0.884 | 8.58 | -0.143 | 1.25 | -- | -- | -- | 0.363 | 1.8 | -- | -- | -- | -- |
| 254.29 | 0.743 | 8.61 | -0.792 | -- | 2.3 | -- | -- | 0.203 | -- | 25.55 | 1158 | -- | -- |
| 220.97 | 0.692 | 8.55 | -- | 0.934 | 1.78 | -- | -- | 0.483 | 2.16 | 27.4 | 1184 | -- | -- |
| 450.63 | 0.992 | 8.57 | -0.0923 | -- | -- | -- | -- | 0.391 | -- | -- | -- | -- | -- |
| 356.77 | 0.884 | 8.58 | -- | 1.25 | -- | -- | -- | 0.379 | 1.8 | -- | -- | -- | -- |
| 269.16 | 0.764 | 8.56 | -- | -- | 2.09 | -- | -- | 0.394 | -- | 26.36 | 1163 | -- | -- |
| 450.86 | 0.991 | 8.56 | -- | -- | -- | -- | -- | 0.401 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 198.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 36 | 201.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 19 |
| 65 | 202.32 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 144 | 206.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 238 | 207.52 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 314 | 212.34 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 15 |
| 324 | 212.54 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 339 | 212.77 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 340 | 212.81 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 363 | 213.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 364 | 213.39 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 374 | 213.81 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 395 | 214.35 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 405 | 214.46 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 408 | 214.47 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 424 | 214.73 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 20 |
| 431 | 214.83 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 435 | 214.90 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 447 | 215.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 470 | 215.17 | temperature | 30 | 1440 | > th | dose independent | sin | 14 | NA |
| 514 | 215.38 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 534 | 215.52 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 536 | 215.52 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 543 | 215.57 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 18 |
| 574 | 215.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 20 |
| 617 | 215.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 623 | 215.83 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 637 | 215.92 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 642 | 215.95 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 664 | 216.00 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 681 | 216.02 | humidity | 80 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 690 | 216.09 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 691 | 216.09 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 5 |
| 730 | 216.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 747 | 216.32 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 19 |
| 789 | 216.47 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 893 | 216.54 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 19 |
| 894 | 216.54 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 944 | 216.86 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 18 |
| 975 | 216.93 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 995 | 216.97 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |