Os02g0106300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0106300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Protein prenyltransferase domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 200.16 | 0.665 | 4.2 | 1.72 | 1.93 | -0.923 | 1.01 | -0.0837 | 0.343 | 19.8 | 29.95 | 400 | -- | -- |
| 200.16 | 0.659 | 4.2 | 1.72 | 1.93 | -0.923 | 1.01 | -- | 0.343 | 19.8 | 29.87 | 399 | -- | -- |
| 203.04 | 0.664 | 4.2 | 1.71 | 1.92 | -0.954 | -- | -0.216 | 0.341 | 19.8 | 29.86 | 408 | -- | -- |
| 203.09 | 0.664 | 4.2 | 1.71 | 1.9 | -0.962 | -- | -- | 0.346 | 19.8 | 29.87 | 420 | -- | -- |
| 246.96 | 0.732 | 4.16 | 1.15 | -- | -2.91 | -- | 1.34 | 0.318 | -- | 1.89 | 830 | -- | -- |
| 213.84 | 0.686 | 4.19 | 1.76 | 2.23 | -- | 1.16 | -- | 0.421 | 19.1 | -- | -- | -- | -- |
| 217.4 | 0.69 | 4.19 | 1.74 | 2.24 | -- | -- | -- | 0.424 | 19.1 | -- | -- | -- | -- |
| 231.29 | 0.708 | 4.16 | 1.53 | -- | -3.04 | -- | -- | 0.275 | -- | 1.862 | 873 | -- | -- |
| 273.61 | 0.77 | 4.22 | -- | 1.79 | -1.06 | -- | -- | 0.193 | 19.8 | 30.04 | 493 | -- | -- |
| 481.42 | 1.03 | 4.14 | 1.7 | -- | -- | -- | -- | 0.384 | -- | -- | -- | -- | -- |
| 297.4 | 0.807 | 4.23 | -- | 2.22 | -- | -- | -- | 0.23 | 19.1 | -- | -- | -- | -- |
| 293.13 | 0.797 | 4.22 | -- | -- | -3.2 | -- | -- | 0.0512 | -- | 1.55 | 906 | -- | -- |
| 557.55 | 1.1 | 4.18 | -- | -- | -- | -- | -- | 0.195 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.56 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 15 |
| 2 | 194.92 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 4 | 195.03 | temperature | 20.0 | 30 | > th | dose independent | rect. | 22 | 14 |
| 7 | 195.26 | radiation | 30.0 | 90 | < th | dose independent | rect. | 9 | 17 |
| 18 | 196.21 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 15 |
| 30 | 197.04 | radiation | 30.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 33 | 197.19 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 10 | 17 |
| 42 | 197.41 | radiation | 30.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 74 | 198.24 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 75 | 198.24 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 10 | 3 |
| 79 | 198.36 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 20 |
| 100 | 198.66 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 111 | 198.86 | temperature | 20.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 119 | 198.93 | radiation | 30.0 | 270 | < th | dose independent | rect. | 7 | 5 |
| 134 | 199.13 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 9 |
| 148 | 199.24 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 21 | 15 |
| 149 | 199.24 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 12 | 10 |
| 158 | 199.32 | wind | 7.0 | 30 | < th | dose independent | rect. | 12 | 20 |
| 167 | 199.36 | wind | 7.0 | 270 | < th | dose independent | rect. | 10 | 21 |
| 183 | 199.51 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 16 | 9 |
| 189 | 199.56 | radiation | 30.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 197 | 199.62 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 21 | 15 |
| 204 | 199.68 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 21 | 15 |
| 217 | 199.79 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 20 |
| 219 | 199.80 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 225 | 199.82 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 239 | 199.90 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 16 |
| 246 | 199.94 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 23 |
| 262 | 200.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 280 | 200.12 | wind | 7.0 | 90 | < th | dose independent | rect. | 12 | 9 |
| 292 | 200.17 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 12 | 7 |
| 353 | 200.32 | wind | 1.0 | 30 | > th | dose dependent | rect. | 8 | 4 |
| 358 | 200.35 | humidity | 70.0 | 90 | < th | dose independent | rect. | 12 | 7 |
| 366 | 200.43 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 368 | 200.44 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 373 | 200.47 | temperature | 25.0 | 270 | < th | dose independent | rect. | 23 | 6 |
| 381 | 200.51 | temperature | 15.0 | 1440 | > th | dose independent | rect. | 6 | 7 |
| 398 | 200.59 | temperature | 20.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 401 | 200.59 | humidity | 70.0 | 90 | < th | dose independent | rect. | 12 | 19 |
| 419 | 200.63 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 12 | 10 |
| 420 | 200.63 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 12 | 17 |
| 422 | 200.64 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 23 |
| 425 | 200.64 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 448 | 200.66 | radiation | 1.0 | 10 | > th | dose dependent | sin | 13 | NA |
| 484 | 200.84 | humidity | 90.0 | 90 | < th | dose independent | rect. | 8 | 4 |
| 502 | 200.90 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 12 | 20 |
| 520 | 201.00 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 12 | 20 |
| 523 | 201.00 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 12 | 20 |
| 531 | 201.05 | temperature | 25.0 | 30 | > th | dose independent | rect. | 12 | 9 |
| 533 | 201.05 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 18 | 8 |
| 543 | 201.07 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 10 | 21 |
| 545 | 201.07 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 10 | 21 |
| 585 | 201.11 | radiation | 20.0 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 614 | 201.16 | temperature | 20.0 | 30 | > th | dose independent | rect. | 16 | 20 |
| 615 | 201.16 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 7 | 6 |
| 657 | 201.27 | wind | 9.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 659 | 201.28 | wind | 1.0 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 687 | 201.33 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 16 |
| 690 | 201.34 | radiation | 40.0 | 270 | < th | dose independent | rect. | 8 | 1 |
| 692 | 201.34 | radiation | 30.0 | 270 | > th | dose independent | rect. | 11 | 3 |
| 706 | 201.37 | humidity | 60.0 | 90 | > th | dose independent | rect. | 8 | 18 |
| 717 | 201.40 | temperature | 20.0 | 270 | > th | dose independent | rect. | 8 | 1 |
| 722 | 201.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 727 | 201.41 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 728 | 201.41 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 729 | 201.41 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 8 | 4 |
| 730 | 201.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 8 | 4 |
| 731 | 201.41 | temperature | 10.0 | 30 | > th | dose independent | rect. | 12 | 20 |
| 732 | 201.41 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 13 | 20 |
| 736 | 201.41 | radiation | 30.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 737 | 201.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 8 | 4 |
| 741 | 201.43 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 747 | 201.45 | radiation | 40.0 | 10 | < th | dose dependent | sin | 14 | NA |
| 749 | 201.46 | radiation | 1.0 | 30 | > th | dose independent | rect. | 8 | 4 |
| 754 | 201.47 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 766 | 201.48 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 785 | 201.53 | humidity | 70.0 | 90 | < th | dose independent | rect. | 12 | 3 |
| 786 | 201.53 | radiation | 30.0 | 270 | < th | dose independent | rect. | 18 | 18 |
| 825 | 201.57 | radiation | 20.0 | 10 | > th | dose dependent | rect. | 13 | 4 |
| 844 | 201.58 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 18 |
| 862 | 201.59 | radiation | 30.0 | 270 | > th | dose independent | rect. | 10 | 6 |
| 918 | 201.66 | wind | 9.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 934 | 201.69 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 18 | 8 |
| 950 | 201.72 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 19 |
| 974 | 201.75 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 21 | 6 |