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Os02g0105300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to L-lactate dehydrogenase (EC 1.1.1.27) (LDH).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.12 (0.0299) R2 : 0.712
β1 : 1.3 (0.11) R2dD : 0.0917 R2D : 0.0685
β2 : 3.51 (0.136) R2dC : 1.56 R2C : 0.277
β3 : -2.15 (0.172) R2dE : 0.354 R2E : -0.964
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.4 (0.0641) R2dN8 : 0.0363 R2N8 : -0.00158
σ : 0.558
deviance : 143.5
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C
peak time of C : 23.9
E
wheather : temperature
threshold : 12.28
memory length : 276
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 18.4
open length of G : 7.33

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
117.3 0.509 6.11 1.28 3.36 -1.92 -4.52 4.38 0.435 23.9 11.15 288 18.1 7.48
129.54 0.53 6.15 1.12 3.32 -1.56 -2.48 -- 0.305 23.9 0.4932 263 18.2 7.95
148.25 0.567 6.11 1.25 2.8 -1.1 -- -1.04 0.378 23.8 6.727 193 19.8 7
143.5 0.558 6.12 1.3 3.51 -2.15 -- -- 0.4 23.9 12.28 276 18.4 7.33
189.56 0.641 6.11 1.02 -- 2.45 -- -4.95 0.284 -- -46.96 751 12.4 11
162.81 0.598 6.12 1.1 2.05 -- -2.27 -- 0.324 23.7 -- -- -- --
185.05 0.637 6.11 1.19 2.06 -- -- -- 0.335 23.6 -- -- -- --
180.16 0.625 6.09 1.28 -- -2.3 -- -- 0.3 -- -80.48 923 20.6 14.7
187 0.637 6.15 -- 3.38 -1.8 -- -- 0.27 23.9 10.48 232 18.7 7.57
452.87 0.994 6.07 1.25 -- -- -- -- 0.359 -- -- -- -- --
222.57 0.698 6.14 -- 2.08 -- -- -- 0.202 23.6 -- -- -- --
207.15 0.67 6.12 -- -- 2.11 -- -- 0.132 -- -38.36 343 13.5 14.9
494.13 1.04 6.1 -- -- -- -- -- 0.22 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 119.02 temperature 10.0 270 > th dose dependent rect. 18 8
2 119.30 temperature 15.0 90 > th dose dependent rect. 20 7
22 123.44 temperature 30.0 270 < th dose dependent rect. 6 7
32 125.04 temperature 25.0 270 < th dose independent rect. 6 7
49 126.62 temperature 30.0 270 < th dose dependent rect. 7 4
61 127.51 temperature 30.0 90 < th dose dependent rect. 16 15
66 127.71 temperature 20.0 30 > th dose independent rect. 20 7
70 127.88 temperature 25.0 270 < th dose independent rect. 14 16
78 128.42 temperature 30.0 10 < th dose dependent rect. 16 15
100 129.25 temperature 30.0 270 < th dose dependent rect. 9 1
125 130.17 temperature 10.0 270 > th dose dependent rect. 2 16
144 130.85 temperature 25.0 720 < th dose independent rect. 7 1
149 130.93 temperature 30.0 720 < th dose dependent rect. 4 5
151 130.98 temperature 20.0 720 > th dose dependent rect. 3 6
194 132.20 temperature 10.0 720 > th dose dependent rect. 3 8
215 132.66 wind 1.0 270 > th dose independent rect. 2 16
235 132.91 temperature 30.0 270 < th dose dependent rect. 23 7
251 133.05 wind 1.0 30 > th dose independent rect. 3 17
258 133.10 radiation 10.0 10 < th dose independent rect. 3 17
295 133.62 temperature 30.0 10 < th dose independent rect. 20 18
319 133.95 temperature 25.0 720 > th dose independent rect. 4 5
321 133.95 radiation 20.0 10 < th dose dependent rect. 3 17
329 134.03 temperature 10.0 30 > th dose dependent rect. 3 17
359 134.26 atmosphere 1010.0 30 < th dose independent rect. 20 7
360 134.27 temperature 30.0 720 < th dose dependent rect. 17 3
417 134.80 wind 7.0 30 < th dose independent rect. 3 17
422 134.84 radiation 20.0 10 < th dose dependent rect. 23 23
467 135.21 temperature 25.0 720 < th dose independent rect. 17 3
505 135.61 temperature 30.0 10 < th dose independent rect. 9 18
509 135.66 temperature 20.0 720 > th dose dependent rect. 8 1
523 135.82 temperature 30.0 720 < th dose dependent rect. 16 5
525 135.84 radiation 10.0 10 < th dose independent rect. 23 23
529 135.87 temperature 30.0 720 < th dose dependent rect. 19 1
549 136.03 temperature 15.0 30 > th dose independent rect. 20 16
552 136.04 temperature 15.0 10 > th dose independent rect. 20 18
582 136.28 temperature 30.0 270 < th dose independent rect. 18 8
583 136.28 wind 1.0 270 > th dose independent rect. 14 16
589 136.34 precipitation 0.1 10 < th dose independent rect. 20 7
593 136.34 precipitation 0.1 10 < th dose dependent rect. 20 7
604 136.38 radiation 20.0 10 < th dose dependent rect. 5 15
614 136.44 temperature 30.0 270 < th dose independent rect. 6 19
615 136.46 temperature 25.0 720 < th dose independent rect. 15 7
623 136.53 temperature 30.0 30 < th dose independent rect. 20 16
636 136.63 wind 1.0 270 > th dose independent rect. 1 5
642 136.66 humidity 70.0 270 > th dose independent rect. 18 8
648 136.69 radiation 1.0 30 < th dose dependent rect. 20 7
650 136.70 temperature 30.0 30 < th dose independent rect. 20 7
651 136.70 humidity 50.0 30 > th dose independent rect. 20 7
654 136.70 atmosphere 995.0 30 > th dose independent rect. 20 7
655 136.70 radiation 1.0 30 < th dose independent rect. 20 7
660 136.70 temperature 10.0 30 > th dose independent rect. 3 17
662 136.70 atmosphere 1015.0 30 < th dose independent rect. 3 17
672 136.73 radiation 10.0 10 < th dose independent rect. 5 15
674 136.74 temperature 20.0 720 > th dose dependent rect. 15 7
686 136.80 radiation 30.0 43200 < th dose dependent rect. 21 7
695 136.87 humidity 50.0 10 > th dose independent rect. 3 17
701 136.88 wind 9.0 30 < th dose independent rect. 20 7
761 137.12 temperature 15.0 30 > th dose independent rect. 9 18
768 137.19 precipitation 0.1 30 < th dose independent rect. 3 17
769 137.19 precipitation 0.1 30 < th dose dependent rect. 3 17
770 137.20 temperature 25.0 720 > th dose independent rect. 15 7
803 137.39 radiation 1.0 270 < th dose independent rect. 18 8
813 137.45 atmosphere 995.0 30 > th dose independent rect. 3 17
819 137.47 temperature 10.0 1440 > th dose independent rect. 21 7
822 137.47 temperature 30.0 1440 < th dose independent rect. 21 7
826 137.47 humidity 50.0 1440 > th dose independent rect. 21 7
832 137.47 atmosphere 995.0 1440 > th dose independent rect. 21 7
833 137.47 radiation 1.0 1440 < th dose independent rect. 21 7
854 137.47 temperature 10.0 1440 > th dose independent rect. 4 17
858 137.47 radiation 10.0 1440 < th dose dependent rect. 21 7
880 137.54 temperature 15.0 270 > th dose independent rect. 2 16
905 137.63 wind 1.0 270 > th dose independent rect. 23 8
913 137.67 wind 7.0 270 < th dose independent rect. 2 16
916 137.68 atmosphere 1010.0 270 < th dose independent rect. 1 17
935 137.75 precipitation 0.1 270 < th dose independent rect. 18 8
936 137.75 precipitation 0.1 270 < th dose dependent rect. 18 8
962 137.87 wind 9.0 10 < th dose dependent rect. 20 7
968 137.90 wind 1.0 30 > th dose independent rect. 12 8
976 137.93 radiation 10.0 270 < th dose dependent rect. 18 8
978 137.94 temperature 30.0 270 < th dose independent rect. 18 18
989 137.96 radiation 10.0 10 < th dose independent rect. 1 19