Os02g0103600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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Os02g0103600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF6, transmembrane domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.45 | 0.507 | 3.41 | -0.381 | 0.468 | -1.1 | -2.41 | 2.69 | 0.0498 | 3.53 | 20.6 | 4194 | -- | -- |
| 115.09 | 0.5 | 3.49 | 0.152 | 0.422 | -2.17 | -2.16 | -- | 0.0578 | 3.66 | 18.2 | 19085 | -- | -- |
| 131.28 | 0.534 | 3.39 | -0.285 | 0.413 | -1.09 | -- | 2.79 | 0.0941 | 3.44 | 20.9 | 4689 | -- | -- |
| 125.31 | 0.521 | 3.47 | 0.162 | 0.432 | -2.33 | -- | -- | 0.0921 | 3.54 | 17.3 | 22036 | -- | -- |
| 141.12 | 0.553 | 3.39 | -0.256 | -- | -1.08 | -- | 2.84 | 0.108 | -- | 21 | 4689 | -- | -- |
| 172.25 | 0.615 | 3.62 | -1.81 | 0.416 | -- | -2.2 | -- | -0.513 | 3.4 | -- | -- | -- | -- |
| 187.51 | 0.641 | 3.61 | -1.77 | 0.406 | -- | -- | -- | -0.5 | 3.48 | -- | -- | -- | -- |
| 135.21 | 0.542 | 3.47 | 0.134 | -- | -2.31 | -- | -- | 0.094 | -- | 17.3 | 22007 | -- | -- |
| 124.54 | 0.52 | 3.48 | -- | 0.431 | -2.18 | -- | -- | 0.043 | 3.51 | 17 | 24775 | -- | -- |
| 196.74 | 0.655 | 3.61 | -1.75 | -- | -- | -- | -- | -0.489 | -- | -- | -- | -- | -- |
| 269.68 | 0.768 | 3.56 | -- | 0.371 | -- | -- | -- | -0.303 | 3.5 | -- | -- | -- | -- |
| 134.55 | 0.54 | 3.49 | -- | -- | -2.18 | -- | -- | 0.0503 | -- | 16.95 | 24792 | -- | -- |
| 277.39 | 0.777 | 3.56 | -- | -- | -- | -- | -- | -0.295 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.89 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 10 | 7 |
| 2 | 110.91 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 6 | 5 |
| 3 | 110.91 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 4 | 111.00 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 5 |
| 5 | 111.00 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 5 |
| 7 | 111.06 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 14 | 111.28 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 25 | 111.45 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 29 | 111.48 | humidity | 50.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 40 | 111.57 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 41 | 111.57 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 55 | 111.73 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 80 | 111.92 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 11 |
| 112 | 112.13 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 114 | 112.13 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 136 | 112.25 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 142 | 112.27 | atmosphere | 1015.0 | 43200 | > th | dose dependent | sin | 17 | NA |
| 150 | 112.30 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 153 | 112.31 | temperature | 20.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 169 | 112.35 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 179 | 112.39 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 181 | 112.39 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 193 | 112.42 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 4 | 17 |
| 203 | 112.46 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 207 | 112.46 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 14 | 11 |
| 208 | 112.46 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 4 | 17 |
| 209 | 112.46 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 4 | 6 |
| 220 | 112.47 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 225 | 112.47 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 233 | 112.48 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 11 | 8 |
| 241 | 112.50 | temperature | 10.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 252 | 112.52 | atmosphere | 1015.0 | 43200 | > th | dose dependent | rect. | 12 | 6 |
| 255 | 112.53 | wind | 3.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 275 | 112.57 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 9 |
| 284 | 112.59 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 11 |
| 286 | 112.59 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 290 | 112.60 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 318 | 112.66 | atmosphere | 1015.0 | 43200 | < th | dose independent | rect. | 12 | 16 |
| 321 | 112.67 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 355 | 112.70 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 360 | 112.71 | atmosphere | 1015.0 | 43200 | < th | dose independent | sin | 16 | NA |
| 374 | 112.72 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 4 | 17 |
| 439 | 112.84 | atmosphere | 1015.0 | 43200 | > th | dose independent | sin | 16 | NA |
| 440 | 112.84 | temperature | 10.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 454 | 112.86 | atmosphere | 1010.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 470 | 112.89 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 477 | 112.89 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 12 | 16 |
| 586 | 113.05 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 23 | 9 |
| 607 | 113.08 | temperature | 10.0 | 43200 | < th | dose dependent | sin | 0 | NA |
| 613 | 113.09 | wind | 3.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 681 | 113.16 | atmosphere | 1015.0 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 695 | 113.16 | temperature | 15.0 | 43200 | < th | dose dependent | rect. | 23 | 17 |
| 696 | 113.17 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 697 | 113.17 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 720 | 113.18 | atmosphere | 1010.0 | 43200 | > th | dose dependent | sin | 23 | NA |
| 753 | 113.19 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 1 | 16 |
| 754 | 113.19 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 3 | 16 |
| 757 | 113.19 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 24 | 19 |
| 859 | 113.24 | temperature | 10.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 955 | 113.28 | temperature | 15.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 966 | 113.28 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 21 |
| 993 | 113.30 | atmosphere | 1010.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |