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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0103500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF6, transmembrane domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.65 (0.0353) R2 : 0.0838
β1 : -0.743 (0.129) R2dD : 0.0689 R2D : 0.0411
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.3 (0.0753) R2dN8 : 0.0426 R2N8 : 0.0149
σ : 0.662
deviance : 200.85
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.15 0.625 3.67 -1.11 0.296 0.197 -0.0201 -3.99 -0.397 5.47 44.44 1255 -- --
190.77 0.643 3.67 -0.649 0.294 0.366 -0.609 -- -0.321 5.54 57.43 1400 -- --
176.83 0.619 3.66 -1.08 0.295 0.197 -- -4.05 -0.38 5.52 45.85 1237 -- --
180.15 0.625 3.62 -0.376 0.228 1.45 -- -- -0.205 6.83 68.42 1531 -- --
181.47 0.627 3.67 -1.07 -- 0.2 -- -4 -0.374 -- 45.86 1237 -- --
196.73 0.658 3.65 -0.752 0.281 -- -0.0468 -- -0.307 5.32 -- -- -- --
196.73 0.657 3.65 -0.752 0.281 -- -- -- -0.307 5.38 -- -- -- --
183.19 0.63 3.62 -0.314 -- 1.64 -- -- -0.195 -- 68.11 1544 -- --
180.82 0.626 3.61 -- 0.28 1.86 -- -- -0.19 4.72 68.28 1531 -- --
200.85 0.662 3.65 -0.743 -- -- -- -- -0.3 -- -- -- -- --
211.65 0.681 3.63 -- 0.269 -- -- -- -0.223 5.49 -- -- -- --
184.85 0.633 3.6 -- -- 1.75 -- -- -0.116 -- 68.69 1531 -- --
215.4 0.685 3.63 -- -- -- -- -- -0.217 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 176.26 atmosphere 1015 43200 > th dose independent rect. 19 1
2 176.35 radiation 30 1440 > th dose dependent rect. 15 17
3 176.58 radiation 30 1440 < th dose independent rect. 15 17
4 176.77 humidity 80 43200 > th dose dependent rect. 5 5
5 176.78 radiation 1 720 > th dose dependent rect. 16 15
6 176.81 humidity 90 43200 < th dose independent rect. 6 1
7 176.93 radiation 1 720 > th dose dependent rect. 17 13
8 177.02 humidity 90 43200 < th dose independent rect. 5 3
12 177.43 wind 9 43200 > th dose dependent rect. 6 8
21 177.54 wind 9 43200 > th dose dependent rect. 18 20
23 177.56 wind 9 43200 > th dose dependent rect. 22 16
30 177.64 wind 7 43200 > th dose dependent rect. 9 1
32 177.65 wind 9 43200 > th dose dependent rect. 2 13
39 177.68 wind 9 43200 > th dose independent rect. 9 1
40 177.68 humidity 80 43200 > th dose dependent rect. 4 8
42 177.69 wind 7 43200 > th dose dependent rect. 6 5
50 177.78 humidity 90 43200 > th dose independent rect. 5 2
51 177.78 radiation 40 1440 > th dose dependent rect. 14 20
53 177.81 wind 9 43200 > th dose independent rect. 8 3
56 177.89 wind 9 43200 > th dose dependent sin 5 NA
66 177.96 radiation 40 1440 > th dose dependent sin 12 NA
70 178.02 radiation 30 1440 < th dose independent rect. 15 20
71 178.05 temperature 10 43200 > th dose independent rect. 5 1
76 178.06 wind 9 43200 > th dose dependent rect. 19 15
85 178.18 temperature 10 43200 > th dose independent rect. 4 4
90 178.19 wind 9 43200 < th dose independent rect. 9 1
114 178.29 wind 7 43200 > th dose dependent rect. 6 1
119 178.30 temperature 10 43200 > th dose independent rect. 4 17
123 178.36 wind 9 43200 < th dose independent rect. 8 3
127 178.38 atmosphere 995 43200 < th dose dependent rect. 7 11
138 178.41 temperature 10 43200 > th dose independent rect. 4 12
146 178.44 temperature 10 43200 > th dose independent rect. 4 14
165 178.51 temperature 10 43200 > th dose independent rect. 4 8
173 178.53 radiation 40 4320 < th dose independent rect. 6 3
179 178.56 temperature 10 43200 < th dose independent rect. 5 1
184 178.57 humidity 90 14400 < th dose independent rect. 24 1
185 178.57 wind 9 43200 > th dose independent rect. 23 2
188 178.58 radiation 40 4320 < th dose independent rect. 1 8
190 178.58 temperature 10 43200 < th dose dependent rect. 5 1
196 178.61 temperature 10 43200 < th dose independent rect. 4 4
200 178.62 radiation 40 4320 < th dose independent rect. 22 11
201 178.62 temperature 10 43200 < th dose independent rect. 4 16
220 178.65 wind 9 43200 > th dose dependent rect. 23 2
242 178.71 atmosphere 1015 43200 > th dose dependent rect. 17 1
259 178.77 atmosphere 995 43200 > th dose independent rect. 9 1
273 178.80 wind 9 43200 > th dose dependent rect. 13 22
275 178.81 atmosphere 995 43200 < th dose independent rect. 7 1
285 178.81 atmosphere 995 43200 < th dose dependent rect. 7 1
314 178.88 humidity 90 43200 < th dose independent rect. 4 11
322 178.90 temperature 10 43200 < th dose dependent rect. 4 4
345 178.95 radiation 30 1440 < th dose independent sin 12 NA
350 178.97 wind 9 43200 > th dose dependent rect. 6 14
374 179.02 wind 9 43200 > th dose dependent rect. 22 22
377 179.04 temperature 10 43200 < th dose independent sin 1 NA
381 179.05 radiation 30 1440 > th dose dependent rect. 15 1
403 179.09 temperature 10 43200 > th dose independent sin 1 NA
411 179.09 wind 9 43200 > th dose dependent rect. 6 19
420 179.10 wind 9 43200 > th dose dependent rect. 6 21
429 179.12 temperature 10 43200 > th dose independent rect. 24 21
430 179.12 atmosphere 995 43200 < th dose dependent sin 23 NA
447 179.14 wind 9 43200 > th dose dependent rect. 2 18
455 179.16 temperature 10 43200 > th dose independent rect. 24 10
462 179.17 temperature 10 43200 > th dose independent rect. 24 8
481 179.19 wind 9 43200 > th dose dependent rect. 23 4
568 179.25 wind 9 43200 > th dose dependent no NA NA
574 179.26 temperature 10 43200 > th dose independent rect. 24 16
581 179.27 atmosphere 995 43200 > th dose independent rect. 7 6
590 179.28 temperature 10 43200 > th dose independent rect. 24 14
601 179.29 temperature 10 43200 < th dose independent rect. 24 8
609 179.29 temperature 10 43200 > th dose independent rect. 24 12
648 179.32 atmosphere 1015 43200 < th dose independent rect. 18 2
718 179.39 wind 9 43200 > th dose independent rect. 18 17
719 179.39 temperature 10 43200 < th dose dependent rect. 24 3
722 179.40 temperature 10 43200 < th dose dependent sin 0 NA
728 179.41 wind 9 43200 > th dose independent rect. 23 12
752 179.44 temperature 10 43200 > th dose independent rect. 11 9
764 179.46 wind 9 43200 > th dose independent rect. 2 9
787 179.50 radiation 40 4320 < th dose independent rect. 15 1
788 179.50 wind 9 43200 > th dose independent rect. 23 4
805 179.51 humidity 80 1440 > th dose independent rect. 24 2
831 179.54 temperature 10 43200 < th dose independent rect. 24 3
849 179.56 wind 9 43200 < th dose independent rect. 5 9
868 179.58 radiation 40 4320 < th dose independent rect. 15 13
872 179.58 temperature 10 43200 < th dose dependent rect. 24 8
892 179.59 radiation 10 720 < th dose independent rect. 15 16
908 179.61 temperature 10 43200 > th dose independent rect. 24 3
940 179.64 radiation 30 1440 < th dose independent rect. 15 5
944 179.64 wind 9 43200 < th dose independent rect. 24 11
949 179.65 humidity 90 43200 > th dose independent rect. 4 11
956 179.65 radiation 40 1440 > th dose dependent rect. 14 22
966 179.67 temperature 10 43200 > th dose independent rect. 11 21
968 179.68 humidity 90 43200 > th dose independent rect. 4 8
969 179.68 radiation 30 1440 < th dose independent rect. 15 8
970 179.68 radiation 30 1440 < th dose independent rect. 15 11
972 179.68 temperature 10 43200 > th dose independent rect. 13 19
979 179.69 humidity 50 4320 > th dose independent rect. 16 2
982 179.69 temperature 10 43200 > th dose independent rect. 17 15