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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0103100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.01 (0.0336) R2 : 0.0599
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.381 (0.0707) R2dN8 : 0.0774 R2N8 : 0.0599
σ : 0.632
deviance : 183.39
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
164.25 0.602 2.95 -0.137 0.394 -0.328 -0.721 3.22 0.386 7.18 2.9 10 -- --
176.12 0.618 3.01 -0.241 0.291 -0.039 -0.487 -- 0.35 8.58 2.9 23 -- --
165.57 0.599 2.96 -0.139 0.389 -0.314 -- 3.14 0.384 7.23 2.798 10 -- --
176.73 0.619 3.01 -0.249 0.309 -0.0928 -- -- 0.342 7.84 2.81 23 -- --
171.76 0.61 2.97 -0.21 -- -0.063 -- 2.83 0.392 -- 2.745 10 -- --
176.15 0.622 3.01 -0.251 0.28 -- -0.501 -- 0.349 8.79 -- -- -- --
176.88 0.623 3.01 -0.27 0.289 -- -- -- 0.348 8.21 -- -- -- --
180.98 0.627 3.02 -0.293 -- 0.179 -- -- 0.358 -- 1.9 10 -- --
178.17 0.622 3 -- 0.333 -0.17 -- -- 0.367 7.48 3.035 23 -- --
181.51 0.63 3.02 -0.267 -- -- -- -- 0.351 -- -- -- -- --
178.8 0.625 3 -- 0.288 -- -- -- 0.378 8.27 -- -- -- --
180.75 0.628 3.01 -- -- 0.549 -- -- 0.395 -- 3.002e-05 12 -- --
183.39 0.632 3.01 -- -- -- -- -- 0.381 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 162.45 wind 3.0 10 < th dose dependent rect. 7 23
3 163.36 temperature 30.0 30 < th dose dependent rect. 8 16
4 163.37 atmosphere 995.0 30 > th dose dependent rect. 6 18
7 163.48 wind 3.0 10 < th dose dependent rect. 22 17
9 163.53 wind 3.0 10 < th dose dependent rect. 9 21
18 163.75 temperature 30.0 90 < th dose dependent rect. 10 14
33 163.96 atmosphere 995.0 30 > th dose dependent rect. 6 6
40 164.09 wind 3.0 10 < th dose dependent rect. 20 19
51 164.15 atmosphere 995.0 30 > th dose dependent rect. 20 16
66 164.28 wind 3.0 10 < th dose dependent rect. 2 23
72 164.33 temperature 30.0 270 < th dose dependent rect. 6 18
76 164.34 wind 3.0 10 < th dose dependent rect. 18 22
79 164.36 wind 3.0 10 < th dose dependent no NA NA
89 164.41 wind 1.0 270 < th dose independent rect. 22 1
104 164.53 wind 3.0 10 < th dose dependent rect. 13 23
139 164.93 temperature 10.0 30 > th dose dependent rect. 12 18
157 165.10 atmosphere 1015.0 30 < th dose independent rect. 12 18
168 165.13 wind 3.0 10 < th dose dependent rect. 11 23
172 165.15 temperature 20.0 270 > th dose dependent rect. 9 18
197 165.21 wind 3.0 10 < th dose dependent rect. 4 23
201 165.26 temperature 15.0 270 > th dose dependent rect. 9 8
208 165.28 temperature 10.0 270 > th dose dependent rect. 9 10
220 165.34 wind 3.0 720 < th dose dependent rect. 17 1
238 165.38 wind 1.0 90 > th dose independent rect. 5 23
260 165.46 wind 9.0 43200 < th dose independent rect. 5 2
261 165.46 wind 1.0 270 < th dose independent rect. 19 5
280 165.54 wind 9.0 4320 < th dose independent rect. 2 5
281 165.54 humidity 50.0 1440 > th dose independent rect. 1 11
284 165.55 atmosphere 995.0 270 > th dose dependent rect. 3 9
297 165.59 wind 9.0 43200 < th dose independent rect. 1 8
301 165.60 atmosphere 1010.0 10 < th dose independent rect. 12 20
319 165.65 radiation 1.0 90 > th dose independent rect. 5 8
352 165.72 wind 9.0 43200 > th dose independent rect. 3 7
384 165.80 wind 9.0 43200 > th dose dependent rect. 4 4
403 165.85 wind 1.0 90 > th dose independent sin 17 NA
410 165.86 atmosphere 1010.0 10 < th dose independent rect. 24 8
411 165.86 wind 9.0 43200 > th dose dependent rect. 23 9
432 165.90 atmosphere 995.0 30 > th dose dependent rect. 8 16
442 165.93 wind 9.0 43200 > th dose dependent rect. 5 2
450 165.95 wind 9.0 43200 > th dose independent rect. 5 3
457 165.98 atmosphere 1015.0 270 < th dose independent rect. 12 15
476 166.06 temperature 30.0 10 < th dose independent rect. 6 7
515 166.18 atmosphere 1010.0 10 < th dose independent rect. 24 20
534 166.22 atmosphere 1010.0 90 < th dose independent rect. 24 19
559 166.26 atmosphere 995.0 270 > th dose dependent rect. 3 20
572 166.31 wind 9.0 43200 < th dose independent rect. 23 10
602 166.37 humidity 70.0 4320 > th dose independent rect. 1 6
603 166.37 atmosphere 1005.0 30 > th dose independent rect. 6 6
618 166.40 wind 3.0 90 < th dose dependent sin 9 NA
636 166.43 atmosphere 1005.0 30 > th dose dependent rect. 6 15
653 166.48 temperature 10.0 270 > th dose dependent rect. 23 18
663 166.50 wind 3.0 10 < th dose dependent sin 8 NA
667 166.51 wind 1.0 270 < th dose independent rect. 11 13
678 166.52 temperature 10.0 270 > th dose dependent rect. 21 22
681 166.54 temperature 10.0 1440 > th dose independent rect. 7 6
684 166.54 atmosphere 995.0 1440 > th dose independent rect. 7 6
686 166.54 temperature 10.0 1440 > th dose independent rect. 13 18
701 166.57 atmosphere 1010.0 90 < th dose independent rect. 24 17
702 166.57 temperature 30.0 270 < th dose dependent rect. 8 1
728 166.62 wind 3.0 10 < th dose dependent rect. 22 2
735 166.63 wind 1.0 30 > th dose independent rect. 6 6
744 166.63 atmosphere 1005.0 30 > th dose dependent rect. 11 22
745 166.64 wind 1.0 270 < th dose independent sin 16 NA
749 166.64 atmosphere 1010.0 270 < th dose independent rect. 9 10
751 166.64 radiation 1.0 90 < th dose independent rect. 24 13
761 166.65 humidity 50.0 1440 > th dose independent rect. 11 1
774 166.66 radiation 1.0 90 < th dose independent rect. 24 10
776 166.66 wind 9.0 30 < th dose independent rect. 12 18
777 166.66 wind 3.0 10 < th dose dependent rect. 22 8
802 166.70 precipitation 0.1 30 < th dose independent rect. 6 6
803 166.70 precipitation 0.1 30 < th dose dependent rect. 6 6
816 166.72 temperature 10.0 30 > th dose independent rect. 6 6
818 166.72 atmosphere 995.0 30 > th dose independent rect. 6 6
819 166.72 atmosphere 1015.0 30 < th dose independent rect. 6 6
824 166.72 temperature 10.0 30 > th dose independent rect. 12 18
834 166.74 wind 3.0 10 < th dose dependent sin 16 NA
837 166.74 temperature 10.0 270 > th dose dependent rect. 24 16
856 166.79 wind 9.0 30 < th dose independent rect. 6 6
867 166.80 wind 1.0 90 > th dose independent rect. 3 23
869 166.80 radiation 20.0 30 < th dose dependent rect. 24 8
921 166.88 temperature 30.0 30 < th dose dependent rect. 24 8
949 166.95 atmosphere 995.0 30 > th dose independent rect. 12 18
954 166.96 radiation 1.0 90 > th dose independent sin 4 NA
957 166.96 temperature 25.0 90 < th dose independent rect. 10 14
960 166.96 wind 3.0 10 < th dose dependent rect. 20 10
968 166.98 precipitation 0.1 30 < th dose independent rect. 12 18
975 166.98 precipitation 0.1 30 < th dose dependent rect. 12 18
977 166.99 wind 9.0 4320 < th dose independent rect. 2 7
978 166.99 temperature 25.0 270 > th dose independent rect. 9 8
985 167.00 temperature 25.0 30 < th dose independent rect. 1 8
987 167.00 wind 1.0 270 > th dose independent rect. 12 15