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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0103000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0444) R2 : 0.0782
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 5.15 (0.839) R2dE : 0.0761 R2E : 0.0762
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0826 (0.0934) R2dN8 : 0.00204 R2N8 : 0.00214
σ : 0.833
deviance : 320.18
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 1.35
memory length : 90
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 8.9
open length of G : 0.991

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
314.68 0.833 3.1 0.382 0.0551 12.5 -0.831 21.6 -0.0476 2.1 1.131 91 8.06 2.6
319.23 0.832 3.12 0.17 0.122 5.35 -0.98 -- -0.061 3.95 1.579 80 7.99 3.23
317.2 0.829 3.1 0.411 0.0522 13.4 -- 24.6 -0.0395 2.45 1.315 92 8.07 2.49
318.27 0.831 3.06 0.263 0.04 5.24 -- -- -0.0529 2.42 1.886 63 8.88 0.48
316.76 0.829 3.11 0.429 -- 13.2 -- 23.8 -0.0407 -- 1.205 95 8.01 2.48
343.87 0.869 3.07 0.179 0.0427 -- -0.747 -- -0.0813 3.75 -- -- -- --
345.47 0.87 3.06 0.19 0.0549 -- -- -- -0.0771 6.44 -- -- -- --
318.36 0.831 3.06 0.264 -- 5.24 -- -- -0.053 -- 1.835 63 8.89 0.515
320.06 0.833 3.07 -- 0.0455 5.15 -- -- -0.0838 3.17 1.347 90 8.9 0.431
345.62 0.869 3.07 0.191 -- -- -- -- -0.076 -- -- -- -- --
346.42 0.871 3.07 -- 0.0575 -- -- -- -0.0983 6.26 -- -- -- --
320.18 0.833 3.07 -- -- 5.15 -- -- -0.0826 -- 1.35 90 8.9 0.991
346.59 0.869 3.07 -- -- -- -- -- -0.0972 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 316.73 radiation 1.0 90 < th dose independent rect. 8 3
2 316.73 radiation 1.0 90 < th dose dependent rect. 8 3
11 326.12 atmosphere 1015.0 1440 > th dose dependent rect. 24 11
15 326.54 atmosphere 1015.0 1440 > th dose independent rect. 24 11
16 326.63 atmosphere 1005.0 720 > th dose dependent rect. 13 14
24 326.99 atmosphere 1015.0 1440 < th dose independent rect. 24 11
33 327.12 humidity 80.0 720 < th dose independent rect. 24 13
34 327.14 atmosphere 995.0 10 > th dose independent sin 6 NA
40 327.31 atmosphere 1005.0 720 > th dose dependent sin 16 NA
45 327.40 temperature 20.0 720 < th dose dependent rect. 9 11
49 327.49 atmosphere 995.0 10 < th dose independent sin 6 NA
51 327.53 atmosphere 995.0 90 < th dose independent rect. 14 1
52 327.53 atmosphere 995.0 10 < th dose independent rect. 15 1
178 327.53 atmosphere 995.0 90 < th dose dependent rect. 14 1
179 327.53 atmosphere 995.0 10 < th dose dependent rect. 15 1
306 327.54 atmosphere 995.0 10 < th dose dependent sin 6 NA
316 327.61 atmosphere 1015.0 720 < th dose dependent rect. 18 1
328 327.78 atmosphere 1005.0 1440 > th dose dependent rect. 13 1
338 327.97 humidity 80.0 720 < th dose independent sin 5 NA
346 328.06 atmosphere 1015.0 720 < th dose dependent rect. 18 3
351 328.13 radiation 1.0 90 < th dose independent rect. 16 1
388 328.58 atmosphere 995.0 720 > th dose dependent rect. 16 9
404 328.76 precipitation 0.1 10 > th dose independent rect. 17 1
414 328.76 temperature 25.0 270 < th dose independent rect. 13 4
433 328.76 precipitation 0.1 10 > th dose dependent rect. 17 1
461 328.76 atmosphere 1015.0 270 < th dose dependent rect. 18 11
468 328.86 atmosphere 1015.0 720 < th dose dependent rect. 18 8
471 328.90 humidity 80.0 720 < th dose independent rect. 21 17
472 328.90 temperature 20.0 720 < th dose dependent rect. 17 3
477 328.92 atmosphere 1005.0 720 > th dose dependent rect. 22 2
480 328.96 humidity 90.0 10 > th dose independent rect. 17 1
491 328.96 humidity 90.0 10 > th dose dependent rect. 17 1
501 328.97 temperature 25.0 90 < th dose independent rect. 16 1
512 329.06 temperature 25.0 10 > th dose independent rect. 7 1
513 329.06 atmosphere 1005.0 270 > th dose dependent rect. 14 18
520 329.11 temperature 25.0 90 < th dose dependent rect. 16 1
523 329.12 atmosphere 1005.0 270 > th dose dependent rect. 16 16
559 329.36 atmosphere 1015.0 30 < th dose dependent rect. 18 12
583 329.49 temperature 25.0 720 < th dose dependent rect. 12 1
587 329.50 temperature 25.0 720 < th dose dependent rect. 11 6
596 329.55 atmosphere 1005.0 1440 > th dose dependent rect. 10 10
602 329.58 temperature 25.0 720 < th dose dependent rect. 11 4
605 329.59 atmosphere 1005.0 1440 > th dose dependent rect. 18 1
619 329.70 temperature 25.0 720 < th dose independent rect. 6 11
660 329.87 radiation 1.0 720 < th dose independent rect. 9 1
661 329.87 radiation 1.0 720 < th dose dependent rect. 9 1
675 329.97 temperature 30.0 30 > th dose dependent rect. 16 1
676 329.98 wind 5.0 1440 < th dose independent rect. 12 1
677 329.98 atmosphere 1015.0 1440 > th dose dependent sin 5 NA
693 330.06 atmosphere 1010.0 30 < th dose independent rect. 21 9
703 330.09 temperature 25.0 270 < th dose dependent rect. 13 4
744 330.15 wind 5.0 1440 > th dose independent rect. 12 1
755 330.22 humidity 80.0 720 > th dose independent sin 4 NA
756 330.22 humidity 80.0 720 > th dose independent rect. 24 15
757 330.22 atmosphere 1005.0 270 > th dose dependent sin 12 NA
760 330.23 atmosphere 1015.0 4320 < th dose independent rect. 19 3
768 330.25 atmosphere 1015.0 1440 > th dose dependent rect. 24 22
769 330.26 temperature 20.0 720 > th dose independent rect. 18 1
789 330.33 temperature 20.0 720 > th dose independent rect. 10 10
813 330.43 atmosphere 1015.0 4320 > th dose independent rect. 19 3
814 330.43 atmosphere 1010.0 270 < th dose independent rect. 18 11
817 330.43 atmosphere 1010.0 10 > th dose dependent rect. 24 11
831 330.49 atmosphere 1015.0 4320 < th dose independent rect. 20 1
864 330.54 wind 5.0 1440 < th dose independent rect. 11 3
871 330.55 atmosphere 1010.0 720 < th dose independent rect. 18 1
872 330.55 atmosphere 1010.0 720 < th dose independent rect. 18 4
901 330.63 atmosphere 1015.0 30 < th dose dependent rect. 21 9
910 330.65 humidity 80.0 720 > th dose independent rect. 5 9
912 330.65 atmosphere 1015.0 720 < th dose dependent sin 15 NA
918 330.66 atmosphere 1010.0 30 < th dose independent rect. 18 12
932 330.71 temperature 25.0 270 < th dose independent rect. 14 1
937 330.72 atmosphere 1015.0 1440 > th dose independent sin 5 NA
956 330.77 wind 5.0 1440 > th dose independent rect. 11 3
961 330.79 atmosphere 1015.0 1440 < th dose independent sin 6 NA
968 330.80 atmosphere 1015.0 720 < th dose dependent rect. 14 15