Os02g0102700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AGL157Cp.
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Os02g0102700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AGL157Cp.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.86 | 0.338 | 12 | 0.142 | 0.567 | 0.302 | 0.11 | -7.34 | 0.0909 | 18.8 | 29.04 | 4090 | -- | -- |
| 55.03 | 0.346 | 11.9 | 1.41 | 0.566 | -0.484 | 0.184 | -- | 0.206 | 18.7 | 28.98 | 5555 | -- | -- |
| 51.83 | 0.335 | 12 | 0.139 | 0.562 | 0.282 | -- | -7.19 | 0.0788 | 18.7 | 28.8 | 4071 | -- | -- |
| 54.89 | 0.345 | 11.9 | 1.38 | 0.549 | -0.463 | -- | -- | 0.161 | 18.6 | 29.47 | 5560 | -- | -- |
| 66.92 | 0.381 | 12 | -0.225 | -- | 0.346 | -- | -7.47 | -0.00317 | -- | 28.26 | 2748 | -- | -- |
| 66.46 | 0.382 | 11.9 | 1.25 | 0.595 | -- | 0.188 | -- | 0.235 | 18.4 | -- | -- | -- | -- |
| 66.54 | 0.382 | 11.9 | 1.24 | 0.595 | -- | -- | -- | 0.235 | 18.5 | -- | -- | -- | -- |
| 71.25 | 0.393 | 11.9 | 1.37 | -- | -0.52 | -- | -- | 0.145 | -- | 30.52 | 5584 | -- | -- |
| 103.04 | 0.473 | 11.9 | -- | 0.572 | -0.364 | -- | -- | 0.0284 | 18.8 | 31.1 | 4081 | -- | -- |
| 84.98 | 0.431 | 11.8 | 1.23 | -- | -- | -- | -- | 0.223 | -- | -- | -- | -- | -- |
| 107.37 | 0.485 | 11.9 | -- | 0.579 | -- | -- | -- | 0.0964 | 18.6 | -- | -- | -- | -- |
| 119.34 | 0.509 | 11.9 | -- | -- | -0.319 | -- | -- | 0.0218 | -- | 30.7 | 5578 | -- | -- |
| 124.86 | 0.522 | 11.9 | -- | -- | -- | -- | -- | 0.0862 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.01 | temperature | 30 | 4320 | > th | dose dependent | rect. | 15 | 4 |
| 31 | 52.09 | temperature | 30 | 4320 | > th | dose dependent | sin | 13 | NA |
| 33 | 52.11 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 38 | 52.15 | temperature | 30 | 4320 | > th | dose independent | sin | 14 | NA |
| 42 | 52.19 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 6 |
| 56 | 52.20 | temperature | 30 | 4320 | < th | dose independent | sin | 14 | NA |
| 88 | 52.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 8 |
| 89 | 52.28 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 91 | 52.29 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 6 |
| 120 | 52.31 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 4 |
| 136 | 52.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 140 | 52.34 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 170 | 52.35 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 205 | 52.37 | temperature | 30 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 226 | 52.37 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 242 | 52.38 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 246 | 52.39 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 248 | 52.39 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 6 |
| 273 | 52.41 | temperature | 30 | 1440 | > th | dose independent | sin | 6 | NA |
| 275 | 52.42 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 315 | 52.46 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 17 |
| 324 | 52.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 393 | 52.48 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 455 | 52.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 18 | 23 |
| 490 | 52.51 | temperature | 30 | 4320 | > th | dose independent | no | NA | NA |
| 591 | 52.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 15 |
| 594 | 52.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 600 | 52.54 | temperature | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 608 | 52.55 | temperature | 30 | 4320 | < th | dose independent | rect. | 17 | 12 |
| 631 | 52.56 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 23 |
| 643 | 52.59 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 661 | 52.60 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 804 | 52.68 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |