Os02g0102600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ankyrin repeat containing protein.
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Os02g0102600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ankyrin repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.32 | 0.207 | 12.2 | 0.516 | 0.345 | -0.379 | 0.256 | 3.25 | -0.00408 | 9.01 | 25.13 | 762 | -- | -- |
| 21.53 | 0.218 | 12.3 | -0.0628 | 0.43 | 0.184 | -0.144 | -- | -0.151 | 8.17 | 26.51 | 939 | -- | -- |
| 19.29 | 0.205 | 12.2 | 0.566 | 0.356 | -0.422 | -- | 3.55 | -0.0134 | 8.92 | 26.03 | 833 | -- | -- |
| 21.59 | 0.218 | 12.3 | -0.0666 | 0.43 | 0.183 | -- | -- | -0.151 | 8.21 | 26.51 | 939 | -- | -- |
| 24.5 | 0.231 | 12.2 | 0.679 | -- | -0.688 | -- | 3.96 | 0.0293 | -- | 25.47 | 774 | -- | -- |
| 22.04 | 0.22 | 12.3 | -0.0383 | 0.424 | -- | -0.123 | -- | -0.146 | 8.68 | -- | -- | -- | -- |
| 22.08 | 0.22 | 12.3 | -0.0421 | 0.424 | -- | -- | -- | -0.146 | 8.72 | -- | -- | -- | -- |
| 28.71 | 0.25 | 12.3 | 0.0536 | -- | -0.352 | -- | -- | -0.117 | -- | 24.4 | 715 | -- | -- |
| 21.7 | 0.218 | 12.3 | -- | 0.429 | 0.168 | -- | -- | -0.143 | 8.26 | 26.51 | 939 | -- | -- |
| 32.28 | 0.265 | 12.3 | -0.0413 | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
| 22.13 | 0.22 | 12.3 | -- | 0.424 | -- | -- | -- | -0.141 | 8.73 | -- | -- | -- | -- |
| 28.72 | 0.25 | 12.3 | -- | -- | -0.349 | -- | -- | -0.114 | -- | 24.5 | 724 | -- | -- |
| 32.32 | 0.265 | 12.3 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.81 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 4 | 18.97 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 7 | 19.01 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 11 | 19.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 12 |
| 13 | 19.15 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 2 |
| 16 | 19.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 14 |
| 20 | 19.21 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 23 | 19.23 | temperature | 25 | 720 | > th | dose dependent | sin | 19 | NA |
| 24 | 19.24 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 7 |
| 71 | 19.29 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 14 |
| 84 | 19.31 | temperature | 25 | 90 | < th | dose independent | rect. | 1 | 10 |
| 92 | 19.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 11 |
| 107 | 19.36 | temperature | 25 | 720 | > th | dose dependent | rect. | 14 | 22 |
| 109 | 19.37 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 8 |
| 122 | 19.39 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 8 |
| 124 | 19.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 20 |
| 149 | 19.42 | temperature | 25 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 150 | 19.43 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 152 | 19.43 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 161 | 19.43 | temperature | 25 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 183 | 19.44 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 228 | 19.48 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 257 | 19.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 321 | 19.58 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 3 |
| 322 | 19.58 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 341 | 19.60 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 345 | 19.61 | radiation | 20 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 354 | 19.62 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 7 |
| 372 | 19.63 | temperature | 25 | 10 | > th | dose independent | rect. | 16 | 12 |
| 375 | 19.63 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 7 |
| 384 | 19.64 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 9 |
| 388 | 19.64 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 20 |
| 389 | 19.64 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 415 | 19.65 | radiation | 1 | 720 | < th | dose independent | rect. | 4 | 20 |
| 432 | 19.66 | temperature | 25 | 90 | < th | dose independent | rect. | 15 | 9 |
| 444 | 19.67 | temperature | 25 | 10 | < th | dose independent | rect. | 14 | 10 |
| 466 | 19.68 | temperature | 15 | 90 | > th | dose dependent | sin | 15 | NA |
| 493 | 19.70 | temperature | 25 | 90 | < th | dose independent | rect. | 13 | 11 |
| 502 | 19.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 18 |
| 509 | 19.71 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 519 | 19.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 15 |
| 537 | 19.72 | temperature | 20 | 10 | > th | dose dependent | sin | 14 | NA |
| 591 | 19.76 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 598 | 19.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 611 | 19.77 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 618 | 19.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 12 |
| 658 | 19.80 | wind | 5 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 667 | 19.80 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 676 | 19.80 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 19 |
| 691 | 19.82 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 695 | 19.82 | wind | 5 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 703 | 19.82 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 712 | 19.82 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 722 | 19.83 | radiation | 20 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 732 | 19.83 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 11 |
| 749 | 19.84 | radiation | 1 | 720 | > th | dose independent | sin | 16 | NA |
| 759 | 19.84 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 780 | 19.85 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 817 | 19.86 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 10 |
| 833 | 19.87 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 8 |
| 848 | 19.87 | humidity | 60 | 720 | > th | dose dependent | rect. | 21 | 1 |
| 855 | 19.87 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 11 |
| 879 | 19.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 19 | 10 |
| 888 | 19.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 903 | 19.88 | wind | 5 | 14400 | > th | dose dependent | rect. | 18 | 15 |
| 977 | 19.91 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 3 |