Os02g0102400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein S5 family protein.
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Os02g0102400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein S5 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.42 | 0.433 | 9.91 | 0.0555 | 1.26 | -0.906 | 0.992 | 0.642 | -0.237 | 16.5 | 30 | 90 | -- | -- |
| 86.84 | 0.434 | 9.89 | 0.164 | 1.25 | -0.9 | 0.795 | -- | -0.202 | 16.5 | 29.8 | 99 | -- | -- |
| 88.65 | 0.439 | 9.9 | 0.132 | 1.27 | -0.9 | -- | 0.146 | -0.198 | 16.5 | 30.3 | 79 | -- | -- |
| 88.52 | 0.438 | 9.89 | 0.163 | 1.25 | -0.934 | -- | -- | -0.205 | 16.6 | 30.21 | 78 | -- | -- |
| 149.04 | 0.569 | 9.89 | 0.0221 | -- | -2.13 | -- | -0.202 | -0.302 | -- | 48.66 | 132 | -- | -- |
| 97.93 | 0.464 | 9.86 | 0.383 | 1.53 | -- | 0.905 | -- | -0.0316 | 16.3 | -- | -- | -- | -- |
| 100.21 | 0.469 | 9.85 | 0.392 | 1.53 | -- | -- | -- | -0.0267 | 16.2 | -- | -- | -- | -- |
| 147.18 | 0.565 | 9.92 | -0.136 | -- | -2.11 | -- | -- | -0.416 | -- | 31.3 | 135 | -- | -- |
| 89.12 | 0.44 | 9.9 | -- | 1.21 | -1.02 | -- | -- | -0.239 | 16.6 | 30.19 | 89 | -- | -- |
| 226.72 | 0.704 | 9.85 | 0.331 | -- | -- | -- | -- | -0.0674 | -- | -- | -- | -- | -- |
| 104.26 | 0.478 | 9.86 | -- | 1.52 | -- | -- | -- | -0.0704 | 16.2 | -- | -- | -- | -- |
| 147.65 | 0.566 | 9.92 | -- | -- | -2.07 | -- | -- | -0.396 | -- | 31.38 | 139 | -- | -- |
| 229.61 | 0.707 | 9.85 | -- | -- | -- | -- | -- | -0.104 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.76 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 76.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 27 | 79.52 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 33 | 79.83 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 35 | 79.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 40 | 80.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 78 | 81.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 84 | 81.19 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 96 | 81.39 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 117 | 81.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 124 | 81.69 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 126 | 81.69 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 127 | 81.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 15 |
| 135 | 81.78 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 169 | 82.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 18 |
| 186 | 82.28 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 205 | 82.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 224 | 82.54 | temperature | 15 | 90 | > th | dose dependent | rect. | 24 | 14 |
| 370 | 83.37 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 421 | 83.58 | temperature | 15 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 473 | 83.80 | humidity | 80 | 10 | < th | dose independent | rect. | 9 | 6 |
| 505 | 83.92 | temperature | 20 | 10 | > th | dose independent | rect. | 9 | 19 |
| 581 | 84.20 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 21 |
| 615 | 84.34 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 636 | 84.42 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 6 |
| 667 | 84.52 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 673 | 84.54 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 716 | 84.70 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 16 |
| 718 | 84.70 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 742 | 84.77 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 15 |
| 784 | 84.87 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 819 | 85.00 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 22 |
| 841 | 85.06 | temperature | 30 | 90 | < th | dose dependent | rect. | 10 | 23 |
| 895 | 85.26 | radiation | 1 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 912 | 85.31 | radiation | 40 | 10 | < th | dose independent | rect. | 5 | 15 |
| 983 | 85.50 | temperature | 20 | 90 | > th | dose independent | rect. | 8 | 7 |
| 990 | 85.53 | humidity | 90 | 90 | < th | dose independent | rect. | 8 | 9 |