Os02g0101300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0101300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.51 | 0.414 | 10.2 | -0.994 | 1.15 | 1.9 | 0.394 | -4.65 | -0.579 | 2.69 | 26.1 | 5415 | -- | -- |
| 85.39 | 0.43 | 10.1 | -0.0616 | 1.15 | 1.58 | 0.238 | -- | -0.568 | 2.52 | 22.7 | 8911 | -- | -- |
| 78.04 | 0.411 | 10.2 | -0.985 | 1.15 | 1.9 | -- | -4.57 | -0.576 | 2.68 | 26.13 | 5409 | -- | -- |
| 85.44 | 0.43 | 10.1 | -0.053 | 1.21 | 1.56 | -- | -- | -0.563 | 2.43 | 22.7 | 8957 | -- | -- |
| 154.04 | 0.578 | 10.2 | -0.962 | -- | 2.08 | -- | -4.38 | -0.575 | -- | 26.1 | 5419 | -- | -- |
| 158.58 | 0.59 | 9.96 | 0.926 | 1.26 | -- | 0.377 | -- | 0.108 | 2.42 | -- | -- | -- | -- |
| 159.1 | 0.591 | 9.96 | 0.915 | 1.26 | -- | -- | -- | 0.106 | 2.4 | -- | -- | -- | -- |
| 165.55 | 0.599 | 10.1 | 0.285 | -- | 1.77 | -- | -- | -0.225 | -- | 26.1 | 5419 | -- | -- |
| 85.52 | 0.431 | 10.1 | -- | 1.21 | 1.54 | -- | -- | -0.551 | 2.44 | 22.74 | 8962 | -- | -- |
| 253.65 | 0.744 | 9.95 | 0.969 | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
| 181.19 | 0.63 | 9.98 | -- | 1.28 | -- | -- | -- | 0.00373 | 2.41 | -- | -- | -- | -- |
| 156.44 | 0.583 | 10.1 | -- | -- | 1.95 | -- | -- | -0.574 | -- | 25.3 | 2555 | -- | -- |
| 278.42 | 0.779 | 9.98 | -- | -- | -- | -- | -- | 0.0293 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 3 | 78.23 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 4 | 78.39 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 5 | 78.41 | temperature | 20 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 6 | 78.45 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 7 | 78.47 | temperature | 20 | 14400 | > th | dose dependent | rect. | 21 | 5 |
| 18 | 78.54 | temperature | 20 | 14400 | > th | dose dependent | rect. | 20 | 11 |
| 33 | 78.62 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 42 | 78.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 17 | 9 |
| 47 | 78.70 | temperature | 20 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 55 | 78.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 6 |
| 63 | 78.75 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 70 | 78.78 | temperature | 25 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 79 | 78.86 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 94 | 78.91 | temperature | 20 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 104 | 78.97 | temperature | 25 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 128 | 79.10 | humidity | 90 | 43200 | > th | dose dependent | sin | 16 | NA |
| 144 | 79.20 | temperature | 20 | 14400 | > th | dose dependent | sin | 10 | NA |
| 167 | 79.34 | temperature | 25 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 168 | 79.34 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 19 |
| 186 | 79.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 19 |
| 232 | 79.55 | temperature | 25 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 260 | 79.60 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 280 | 79.62 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 322 | 79.67 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 23 |
| 327 | 79.69 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 336 | 79.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 337 | 79.70 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 349 | 79.71 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 361 | 79.73 | temperature | 20 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 369 | 79.74 | humidity | 90 | 43200 | > th | dose independent | sin | 16 | NA |
| 372 | 79.74 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 381 | 79.75 | temperature | 20 | 43200 | > th | dose independent | rect. | 22 | 4 |
| 421 | 79.82 | temperature | 25 | 14400 | < th | dose independent | rect. | 8 | 3 |
| 433 | 79.83 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 23 |
| 470 | 79.91 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 575 | 80.17 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 619 | 80.26 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 643 | 80.32 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 681 | 80.42 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 4 |
| 687 | 80.44 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 7 |
| 708 | 80.49 | radiation | 10 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 753 | 80.56 | radiation | 10 | 43200 | < th | dose independent | rect. | 19 | 12 |
| 759 | 80.57 | radiation | 10 | 43200 | < th | dose independent | rect. | 21 | 10 |
| 769 | 80.58 | radiation | 10 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 789 | 80.61 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 19 |
| 820 | 80.67 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 824 | 80.67 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 857 | 80.73 | temperature | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 866 | 80.74 | temperature | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 882 | 80.76 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 884 | 80.76 | radiation | 1 | 43200 | > th | dose independent | rect. | 7 | 7 |
| 889 | 80.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 898 | 80.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 7 | 7 |
| 906 | 80.79 | humidity | 90 | 43200 | < th | dose independent | sin | 16 | NA |
| 909 | 80.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 916 | 80.81 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 5 |
| 969 | 80.89 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 5 |