Os01g0978500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os01g0978500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.18 | 0.364 | 12 | 0.241 | 0.471 | -1.53 | 1.33 | 2.87 | -0.153 | 1.37 | 9.344 | 224 | -- | -- |
| 64.98 | 0.375 | 12 | -0.188 | 0.453 | -1.54 | 0.835 | -- | -0.261 | 0.784 | 13.86 | 219 | -- | -- |
| 65.98 | 0.378 | 12 | 0.0664 | 0.488 | -1.58 | -- | 1.71 | -0.193 | 0.633 | -1.039 | 265 | -- | -- |
| 67.91 | 0.384 | 12 | -0.211 | 0.436 | -1.58 | -- | -- | -0.261 | 0.683 | 13.66 | 211 | -- | -- |
| 73.33 | 0.399 | 12 | 0.0377 | -- | -2.01 | -- | 1.17 | -0.153 | -- | 9.452 | 95 | -- | -- |
| 89.43 | 0.443 | 12.1 | -0.518 | 0.794 | -- | 1.07 | -- | -0.477 | 2.44 | -- | -- | -- | -- |
| 93.59 | 0.453 | 12.1 | -0.547 | 0.797 | -- | -- | -- | -0.483 | 2.48 | -- | -- | -- | -- |
| 74.39 | 0.402 | 12 | -0.131 | -- | -1.98 | -- | -- | -0.199 | -- | 12.75 | 86 | -- | -- |
| 68.96 | 0.387 | 12 | -- | 0.415 | -1.68 | -- | -- | -0.225 | 0.456 | 13.79 | 209 | -- | -- |
| 131 | 0.535 | 12.1 | -0.513 | -- | -- | -- | -- | -0.463 | -- | -- | -- | -- | -- |
| 101.48 | 0.471 | 12.1 | -- | 0.787 | -- | -- | -- | -0.422 | 2.47 | -- | -- | -- | -- |
| 74.81 | 0.403 | 12 | -- | -- | -2.02 | -- | -- | -0.179 | -- | 11.98 | 86 | -- | -- |
| 137.94 | 0.548 | 12.1 | -- | -- | -- | -- | -- | -0.406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 21 |
| 2 | 57.01 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 18 |
| 22 | 58.44 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 27 | 58.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 45 | 59.31 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 51 | 59.49 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 3 |
| 56 | 59.61 | temperature | 20 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 67 | 59.78 | temperature | 10 | 270 | > th | dose dependent | sin | 0 | NA |
| 85 | 60.02 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 128 | 60.60 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 11 |
| 131 | 60.62 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 135 | 60.63 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 4 |
| 136 | 60.64 | temperature | 20 | 1440 | < th | dose dependent | sin | 9 | NA |
| 147 | 60.70 | temperature | 20 | 1440 | < th | dose dependent | rect. | 21 | 13 |
| 168 | 60.80 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 221 | 61.17 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 225 | 61.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 237 | 61.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 252 | 61.46 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 253 | 61.47 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 272 | 61.57 | temperature | 30 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 276 | 61.61 | temperature | 15 | 720 | > th | dose dependent | sin | 5 | NA |
| 299 | 61.77 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 302 | 61.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 309 | 61.80 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 314 | 61.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 23 |
| 336 | 61.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 337 | 61.98 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 13 |
| 347 | 62.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 16 |
| 350 | 62.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 358 | 62.06 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 374 | 62.13 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 19 |
| 387 | 62.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 16 |
| 411 | 62.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 18 |
| 465 | 62.37 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 23 |
| 489 | 62.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 12 |
| 551 | 62.55 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 552 | 62.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 14 |
| 562 | 62.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 21 |
| 579 | 62.63 | temperature | 20 | 1440 | < th | dose independent | sin | 5 | NA |
| 581 | 62.63 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 21 |
| 590 | 62.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 645 | 62.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 671 | 62.78 | temperature | 20 | 1440 | > th | dose independent | sin | 5 | NA |
| 679 | 62.79 | radiation | 30 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 719 | 62.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 10 |
| 725 | 62.85 | temperature | 20 | 1440 | < th | dose dependent | rect. | 10 | 20 |
| 730 | 62.86 | humidity | 80 | 14400 | > th | dose dependent | rect. | 1 | 10 |
| 737 | 62.88 | radiation | 30 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 751 | 62.90 | radiation | 20 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 787 | 62.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 10 |
| 793 | 62.94 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 805 | 62.96 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 5 |
| 821 | 62.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 839 | 63.01 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 855 | 63.02 | temperature | 20 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 862 | 63.04 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 871 | 63.05 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 23 |
| 878 | 63.06 | radiation | 30 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 882 | 63.06 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 907 | 63.10 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 917 | 63.11 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 924 | 63.12 | humidity | 80 | 14400 | > th | dose dependent | rect. | 21 | 15 |
| 984 | 63.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |