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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0977400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.06 (0.0546) R2 : 0.587
β1 : 2.58 (0.2) R2dD : 0.152 R2D : 0.129
β2 : 3.59 (0.17) R2dC : 1.07 R2C : 0.614
β3 : -1.62 (0.123) R2dE : -0.164 R2E : -0.625
β4 : 0.619 (0.789) R2dD*C : 0.00374 R2D*C : -0.00124
β5 : -1.02 (0.552) R2dD*E : -0.0111 R2D*E : -0.0043
γ1 : 0.337 (0.116) R2dN8 : 0.0152 R2N8 : -0.0075
σ : 0.719
deviance : 234.41
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C
peak time of C : 20.3
E
wheather : radiation
threshold : 5
memory length : 4
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
234.41 0.719 6.06 2.58 3.59 -1.62 0.619 -1.02 0.337 20.3 5 4 -- --
251.92 0.745 6.05 2.5 3.72 -0.544 0.823 -- 0.397 20 33.41 8 -- --
254.16 0.748 6.04 2.49 3.73 -0.536 -- -0.493 0.439 20 35.1 17 -- --
240.01 0.722 6.1 2.54 3.61 -1.01 -- -- 0.243 20.1 39.82 334 -- --
979.87 1.46 5.94 2.53 -- 0.983 -- -0.63 0.333 -- 51.51 11 -- --
263.18 0.761 6.04 2.53 3.67 -- 0.69 -- 0.428 19.8 -- -- -- --
264.55 0.762 6.04 2.51 3.67 -- -- -- 0.429 19.8 -- -- -- --
345.82 0.866 5.95 2.26 -- -5.09 -- -- 0.347 -- 2.18 932 -- --
399.4 0.931 6.11 -- 3.58 -1.06 -- -- 0.147 20.1 40.05 408 -- --
992.55 1.47 5.95 2.47 -- -- -- -- 0.378 -- -- -- -- --
430.73 0.971 6.1 -- 3.65 -- -- -- 0.15 19.8 -- -- -- --
461.64 1 6.07 -- -- -5.4 -- -- -0.147 -- 1.914 962 -- --
1153.04 1.58 6.01 -- -- -- -- -- 0.104 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 226.57 radiation 40 270 < th dose independent rect. 4 23
2 226.63 radiation 40 270 < th dose independent rect. 6 14
9 229.76 radiation 40 270 < th dose dependent rect. 6 13
10 229.91 temperature 30 90 < th dose dependent rect. 23 8
11 229.99 wind 7 270 < th dose independent rect. 8 23
12 230.00 radiation 40 270 < th dose independent rect. 14 23
13 230.09 radiation 40 10 < th dose independent rect. 7 5
32 231.41 radiation 20 270 < th dose independent rect. 7 1
34 231.50 humidity 60 10 > th dose independent rect. 7 16
46 231.98 radiation 40 10 < th dose independent rect. 7 16
51 232.21 radiation 40 270 < th dose dependent rect. 4 23
60 232.70 radiation 40 270 < th dose dependent rect. 7 1
75 233.19 radiation 40 90 < th dose dependent rect. 7 20
76 233.25 humidity 60 10 > th dose independent rect. 7 5
93 233.73 radiation 20 270 < th dose independent rect. 6 3
105 234.04 radiation 40 270 < th dose dependent rect. 6 4
119 234.31 radiation 40 270 < th dose independent sin 23 NA
123 234.41 radiation 40 270 < th dose independent no NA NA
126 234.45 wind 7 30 < th dose independent rect. 12 19
136 234.66 humidity 60 90 > th dose dependent rect. 22 9
146 234.89 wind 9 1440 < th dose independent rect. 24 8
152 234.98 radiation 1 270 > th dose dependent rect. 9 21
157 235.04 radiation 40 720 < th dose independent rect. 24 10
165 235.19 temperature 30 90 < th dose independent rect. 7 15
174 235.25 radiation 10 270 > th dose dependent rect. 10 23
176 235.26 radiation 1 270 > th dose dependent rect. 9 8
200 235.45 radiation 40 270 < th dose dependent rect. 5 7
212 235.65 radiation 10 270 > th dose dependent sin 22 NA
213 235.67 wind 5 30 < th dose independent rect. 23 8
214 235.67 radiation 10 270 > th dose dependent rect. 11 3
225 235.79 radiation 30 10 < th dose independent rect. 7 20
237 235.97 temperature 15 1440 > th dose independent rect. 8 5
267 236.04 radiation 40 270 < th dose independent rect. 4 8
272 236.09 temperature 25 270 > th dose dependent rect. 11 3
279 236.13 atmosphere 995 10 > th dose dependent rect. 23 8
314 236.17 radiation 40 270 < th dose dependent rect. 14 22
357 236.41 atmosphere 995 30 > th dose independent rect. 7 16
358 236.43 wind 5 270 < th dose independent rect. 11 3
409 236.69 radiation 20 270 > th dose dependent no NA NA
410 236.69 humidity 90 4320 > th dose dependent rect. 23 4
518 236.70 radiation 40 270 > th dose independent rect. 11 23
556 236.85 radiation 40 270 > th dose independent sin 23 NA
595 236.92 wind 1 10 > th dose independent rect. 7 16
603 236.96 radiation 20 270 > th dose dependent rect. 15 23
606 237.00 temperature 15 270 > th dose independent rect. 8 23
607 237.01 atmosphere 995 43200 < th dose independent rect. 17 5
610 237.02 radiation 40 270 > th dose independent no NA NA
611 237.02 radiation 40 270 > th dose independent rect. 8 8
917 237.19 radiation 40 270 < th dose dependent sin 22 NA
918 237.20 atmosphere 995 43200 > th dose independent rect. 17 5
922 237.22 atmosphere 995 43200 < th dose dependent rect. 17 5