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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0977300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to MYB-related protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.93 (0.0397) R2 : 0.000717
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0478 (0.0836) R2dN8 : 0.000926 R2N8 : 0.000717
σ : 0.748
deviance : 256.53
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.52 0.73 2.89 0.279 0.259 -0.466 0.508 -0.23 0.26 14.4 25.3 131 -- --
241.66 0.724 2.88 0.341 0.252 -0.466 0.402 -- 0.276 14.3 25.3 131 -- --
242.27 0.725 2.88 0.343 0.253 -0.459 -- -0.0179 0.276 14.1 25.4 130 -- --
242.26 0.725 2.88 0.351 0.247 -0.457 -- -- 0.276 14.1 25.37 131 -- --
243.21 0.726 2.88 0.317 -- -0.418 -- -0.245 0.298 -- 24.3 192 -- --
253.38 0.746 2.92 0.223 0.182 -- -0.214 -- 0.0684 6.62 -- -- -- --
253.48 0.746 2.92 0.221 0.181 -- -- -- 0.0693 6.93 -- -- -- --
243.65 0.727 2.88 0.361 -- -0.406 -- -- 0.271 -- 24.27 192 -- --
245.37 0.73 2.89 -- 0.212 -0.411 -- -- 0.217 13.6 25.4 123 -- --
255.2 0.746 2.93 0.224 -- -- -- -- 0.0727 -- -- -- -- --
254.76 0.747 2.93 -- 0.184 -- -- -- 0.0447 6.86 -- -- -- --
246.94 0.732 2.9 -- -- -0.362 -- -- 0.212 -- 24.21 190 -- --
256.53 0.748 2.93 -- -- -- -- -- 0.0478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.21 temperature 25 270 < th dose independent rect. 14 1
2 229.87 temperature 25 90 < th dose dependent rect. 15 2
14 233.00 temperature 25 270 < th dose dependent rect. 11 5
22 234.12 humidity 70 30 < th dose independent rect. 16 17
27 234.46 humidity 80 90 < th dose dependent rect. 21 11
28 234.47 humidity 80 10 < th dose dependent rect. 20 12
32 234.62 humidity 70 30 < th dose dependent rect. 16 17
37 235.03 humidity 80 90 < th dose dependent rect. 1 7
39 235.05 humidity 80 90 < th dose dependent rect. 23 9
44 235.09 humidity 70 10 < th dose independent rect. 18 14
47 235.11 humidity 80 10 < th dose dependent rect. 24 8
48 235.12 humidity 80 90 < th dose dependent rect. 3 5
56 235.15 radiation 30 90 > th dose dependent rect. 7 1
69 235.15 humidity 70 90 < th dose dependent rect. 18 14
96 235.20 radiation 30 90 > th dose independent rect. 7 1
191 235.28 humidity 80 90 < th dose independent rect. 3 4
234 235.36 humidity 80 90 < th dose independent rect. 5 2
265 235.44 humidity 70 10 < th dose independent rect. 7 1
495 235.84 temperature 25 10 < th dose dependent rect. 16 1
497 235.91 temperature 25 90 < th dose dependent rect. 8 10
500 236.04 temperature 25 10 < th dose dependent rect. 8 10
540 236.67 temperature 25 270 > th dose independent rect. 5 18
553 236.86 atmosphere 1005 30 > th dose dependent rect. 15 3
598 237.06 temperature 25 10 < th dose independent rect. 15 3
600 237.07 atmosphere 1005 270 > th dose dependent rect. 14 2
740 237.76 temperature 25 720 < th dose independent rect. 5 11
758 237.90 temperature 25 720 < th dose independent rect. 9 7
809 238.41 temperature 25 720 > th dose independent rect. 8 7
822 238.56 temperature 25 270 < th dose dependent sin 22 NA
823 238.58 temperature 10 270 > th dose dependent rect. 7 15
847 238.66 atmosphere 1005 10 > th dose dependent rect. 7 1
866 238.82 temperature 20 30 > th dose dependent rect. 7 19
869 238.83 temperature 15 270 > th dose dependent rect. 5 18
880 238.91 temperature 25 720 > th dose independent rect. 5 11
921 239.22 temperature 25 720 < th dose independent sin 0 NA
928 239.28 temperature 25 720 > th dose independent sin 0 NA