Os01g0976500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : t-snare domain containing protein.
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Os01g0976500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : t-snare domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 170.15 | 0.613 | 3.65 | 0.514 | 1.3 | -1.39 | -0.728 | 2.98 | 0.759 | 22.3 | 24.48 | 1087 | -- | -- |
| 173.38 | 0.613 | 3.74 | -0.169 | 1.3 | -1.16 | -0.325 | -- | 0.588 | 22.2 | 24.49 | 1066 | -- | -- |
| 172.11 | 0.611 | 3.67 | 0.387 | 1.3 | -1.34 | -- | 2.29 | 0.719 | 22.3 | 24.51 | 1087 | -- | -- |
| 173.98 | 0.614 | 3.74 | -0.16 | 1.31 | -1.13 | -- | -- | 0.568 | 22.2 | 24.74 | 1046 | -- | -- |
| 247.11 | 0.732 | 3.62 | 0.527 | -- | -1.06 | -- | 2.36 | 0.766 | -- | 24.26 | 1469 | -- | -- |
| 208.63 | 0.677 | 3.76 | -0.498 | 1.04 | -- | -0.684 | -- | 0.441 | 22 | -- | -- | -- | -- |
| 210.46 | 0.679 | 3.76 | -0.471 | 1.05 | -- | -- | -- | 0.443 | 22 | -- | -- | -- | -- |
| 249.13 | 0.735 | 3.7 | -0.163 | -- | -0.823 | -- | -- | 0.573 | -- | 24.4 | 1481 | -- | -- |
| 174.58 | 0.615 | 3.73 | -- | 1.31 | -1.17 | -- | -- | 0.587 | 22.2 | 24.68 | 1045 | -- | -- |
| 276.25 | 0.777 | 3.73 | -0.459 | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
| 216.31 | 0.688 | 3.75 | -- | 1.04 | -- | -- | -- | 0.495 | 21.9 | -- | -- | -- | -- |
| 249.78 | 0.736 | 3.7 | -- | -- | -0.86 | -- | -- | 0.596 | -- | 24.36 | 1482 | -- | -- |
| 281.8 | 0.784 | 3.72 | -- | -- | -- | -- | -- | 0.494 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 167.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 17 |
| 22 | 170.02 | temperature | 25 | 720 | > th | dose dependent | sin | 13 | NA |
| 52 | 172.24 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 2 |
| 107 | 173.91 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 19 |
| 240 | 174.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 12 |
| 256 | 174.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 22 |
| 267 | 174.53 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 427 | 175.90 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 18 |
| 486 | 177.06 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 490 | 177.12 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 12 |
| 496 | 177.25 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 3 |
| 497 | 177.27 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 9 |
| 498 | 177.28 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 501 | 177.32 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 519 | 177.36 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 3 |
| 528 | 177.43 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 4 |
| 539 | 177.50 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 570 | 177.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 577 | 177.80 | temperature | 25 | 720 | > th | dose independent | sin | 16 | NA |
| 580 | 177.85 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 588 | 177.90 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 594 | 177.94 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 612 | 178.04 | radiation | 1 | 720 | > th | dose independent | rect. | 15 | 15 |
| 624 | 178.11 | temperature | 25 | 720 | < th | dose independent | rect. | 14 | 19 |
| 640 | 178.18 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 648 | 178.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 9 |
| 663 | 178.27 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 698 | 178.41 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 724 | 178.49 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 772 | 178.61 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 4 |
| 792 | 178.68 | humidity | 90 | 43200 | < th | dose independent | sin | 11 | NA |
| 809 | 178.72 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 11 |
| 883 | 178.88 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 921 | 178.95 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 6 |
| 949 | 178.98 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 16 |
| 979 | 179.05 | radiation | 20 | 1440 | > th | dose independent | rect. | 16 | 1 |