Os01g0976200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 11-S plant seed storage protein family protein.
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Os01g0976200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 11-S plant seed storage protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.22 | 0.298 | 3.21 | 0.197 | 0.18 | 0.25 | -0.0522 | 1.06 | -0.0255 | 7.82 | 92 | 5903 | -- | -- |
| 41.76 | 0.301 | 3.2 | 0.138 | 0.177 | 0.272 | -0.063 | -- | -0.0477 | 7.77 | 93 | 7232 | -- | -- |
| 40.23 | 0.295 | 3.21 | 0.195 | 0.18 | 0.251 | -- | 1.07 | -0.0254 | 7.84 | 92 | 5905 | -- | -- |
| 41.77 | 0.301 | 3.2 | 0.136 | 0.177 | 0.276 | -- | -- | -0.049 | 7.85 | 92.96 | 7232 | -- | -- |
| 41.98 | 0.302 | 3.21 | 0.195 | -- | 0.255 | -- | 1.05 | -0.0204 | -- | 91.88 | 5843 | -- | -- |
| 42.87 | 0.307 | 3.19 | 0.102 | 0.178 | -- | -0.0646 | -- | 0.00968 | 7.77 | -- | -- | -- | -- |
| 42.88 | 0.307 | 3.19 | 0.1 | 0.178 | -- | -- | -- | 0.00984 | 7.84 | -- | -- | -- | -- |
| 43.46 | 0.307 | 3.21 | 0.139 | -- | 0.283 | -- | -- | -0.0489 | -- | 92.39 | 7192 | -- | -- |
| 42.25 | 0.303 | 3.2 | -- | 0.18 | 0.251 | -- | -- | -0.0594 | 7.81 | 97.02 | 7232 | -- | -- |
| 44.6 | 0.312 | 3.19 | 0.102 | -- | -- | -- | -- | 0.0123 | -- | -- | -- | -- | -- |
| 43.15 | 0.307 | 3.19 | -- | 0.179 | -- | -- | -- | -0.00134 | 7.8 | -- | -- | -- | -- |
| 43.94 | 0.309 | 3.21 | -- | -- | 0.253 | -- | -- | -0.0554 | -- | 92 | 7172 | -- | -- |
| 44.88 | 0.313 | 3.2 | -- | -- | -- | -- | -- | 0.000917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.50 | humidity | 80 | 14400 | < th | dose dependent | rect. | 3 | 6 |
| 4 | 39.56 | temperature | 25 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 6 | 39.62 | humidity | 80 | 14400 | < th | dose dependent | rect. | 21 | 13 |
| 13 | 39.71 | atmosphere | 1010 | 30 | < th | dose independent | rect. | 6 | 1 |
| 17 | 39.77 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 1 |
| 20 | 39.81 | humidity | 70 | 14400 | > th | dose independent | rect. | 4 | 6 |
| 29 | 39.82 | humidity | 70 | 14400 | > th | dose independent | rect. | 7 | 3 |
| 33 | 39.85 | humidity | 70 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 34 | 39.86 | humidity | 70 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 71 | 40.18 | wind | 3 | 30 | > th | dose dependent | rect. | 6 | 1 |
| 74 | 40.22 | humidity | 80 | 14400 | < th | dose dependent | sin | 8 | NA |
| 77 | 40.23 | wind | 3 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 97 | 40.29 | humidity | 50 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 101 | 40.30 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 106 | 40.32 | humidity | 60 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 125 | 40.36 | humidity | 80 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 129 | 40.39 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 130 | 40.39 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 161 | 40.45 | humidity | 60 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 164 | 40.46 | atmosphere | 995 | 720 | > th | dose independent | rect. | 7 | 8 |
| 172 | 40.47 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 7 |
| 173 | 40.47 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 3 | 23 |
| 178 | 40.48 | humidity | 70 | 4320 | > th | dose independent | rect. | 8 | 9 |
| 179 | 40.48 | humidity | 70 | 4320 | > th | dose independent | rect. | 4 | 13 |
| 189 | 40.48 | wind | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 236 | 40.51 | humidity | 70 | 4320 | < th | dose independent | rect. | 8 | 9 |
| 237 | 40.51 | humidity | 50 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 240 | 40.52 | humidity | 70 | 4320 | > th | dose independent | sin | 2 | NA |
| 307 | 40.56 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 353 | 40.56 | humidity | 50 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 389 | 40.58 | humidity | 90 | 4320 | < th | dose dependent | rect. | 11 | 2 |
| 401 | 40.59 | humidity | 70 | 4320 | < th | dose independent | sin | 2 | NA |
| 491 | 40.61 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 8 | 22 |
| 492 | 40.61 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 498 | 40.61 | humidity | 90 | 4320 | < th | dose dependent | rect. | 6 | 10 |
| 508 | 40.62 | wind | 1 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 514 | 40.62 | humidity | 60 | 14400 | < th | dose dependent | rect. | 12 | 1 |
| 562 | 40.63 | humidity | 50 | 4320 | > th | dose dependent | sin | 3 | NA |
| 608 | 40.64 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 23 |
| 616 | 40.64 | humidity | 90 | 90 | < th | dose dependent | rect. | 2 | 5 |
| 641 | 40.65 | humidity | 70 | 4320 | > th | dose independent | no | NA | NA |
| 723 | 40.65 | humidity | 70 | 4320 | > th | dose independent | rect. | 10 | 23 |
| 724 | 40.65 | humidity | 70 | 4320 | > th | dose independent | rect. | 13 | 23 |
| 772 | 40.66 | humidity | 90 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 806 | 40.67 | humidity | 70 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 807 | 40.67 | wind | 3 | 14400 | > th | dose independent | rect. | 10 | 2 |
| 860 | 40.68 | wind | 5 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 891 | 40.69 | humidity | 70 | 4320 | < th | dose independent | rect. | 14 | 3 |
| 907 | 40.69 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 10 | 20 |
| 916 | 40.69 | humidity | 80 | 4320 | < th | dose dependent | rect. | 14 | 1 |