Os01g0974900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0974900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Conserved hypothetical protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 242.62 | 0.732 | 4.4 | 1.18 | 0.602 | -0.718 | -0.248 | -1.66 | -0.252 | 19.1 | 30.3 | 3932 | -- | -- |
| 242.81 | 0.726 | 4.37 | 1.44 | 0.605 | -0.893 | -0.189 | -- | -0.246 | 18.9 | 30.37 | 3931 | -- | -- |
| 242.76 | 0.726 | 4.4 | 1.18 | 0.603 | -0.715 | -- | -1.66 | -0.252 | 19 | 30.32 | 3931 | -- | -- |
| 242.9 | 0.726 | 4.37 | 1.44 | 0.61 | -0.915 | -- | -- | -0.253 | 19 | 30.4 | 3931 | -- | -- |
| 261.59 | 0.753 | 4.4 | 1.04 | -- | -0.615 | -- | -2.48 | -0.266 | -- | 30.3 | 4067 | -- | -- |
| 270.13 | 0.771 | 4.33 | 1.21 | 0.615 | -- | -0.053 | -- | -0.096 | 18.5 | -- | -- | -- | -- |
| 270.13 | 0.77 | 4.33 | 1.21 | 0.615 | -- | -- | -- | -0.0961 | 18.5 | -- | -- | -- | -- |
| 261.98 | 0.754 | 4.36 | 1.44 | -- | -0.927 | -- | -- | -0.265 | -- | 30.39 | 4086 | -- | -- |
| 294.74 | 0.8 | 4.39 | -- | 0.59 | -0.64 | -- | -- | -0.352 | 18.9 | 30.7 | 3887 | -- | -- |
| 289.79 | 0.795 | 4.32 | 1.2 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 308.98 | 0.822 | 4.36 | -- | 0.599 | -- | -- | -- | -0.231 | 18.6 | -- | -- | -- | -- |
| 312.89 | 0.824 | 4.38 | -- | -- | -0.636 | -- | -- | -0.37 | -- | 30.74 | 4072 | -- | -- |
| 327.68 | 0.845 | 4.35 | -- | -- | -- | -- | -- | -0.242 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 238.78 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 17 |
| 2 | 239.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 18 |
| 17 | 240.54 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 24 | 240.60 | radiation | 30 | 4320 | > th | dose dependent | rect. | 15 | 17 |
| 26 | 240.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 29 | 240.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 34 | 240.92 | radiation | 20 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 72 | 241.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 15 |
| 77 | 241.35 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 82 | 241.49 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 100 | 241.57 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 103 | 241.64 | temperature | 20 | 720 | > th | dose dependent | sin | 13 | NA |
| 105 | 241.70 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 12 |
| 106 | 241.72 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 9 |
| 109 | 241.76 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 111 | 241.76 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 4 |
| 112 | 241.76 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 7 |
| 122 | 241.83 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 11 |
| 129 | 241.87 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 132 | 241.89 | radiation | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 150 | 242.04 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 151 | 242.05 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 16 |
| 155 | 242.06 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 5 |
| 175 | 242.09 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 14 |
| 186 | 242.16 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 200 | 242.26 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 14 |
| 217 | 242.41 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 220 | 242.42 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 5 |
| 221 | 242.42 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 14 |
| 225 | 242.43 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 261 | 242.57 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 270 | 242.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 19 |
| 279 | 242.63 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 289 | 242.66 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 290 | 242.66 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 14 |
| 311 | 242.73 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 314 | 242.74 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 356 | 242.82 | temperature | 30 | 4320 | > th | dose dependent | rect. | 14 | 1 |
| 366 | 242.84 | temperature | 15 | 4320 | > th | dose dependent | sin | 5 | NA |
| 395 | 242.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 10 |
| 445 | 242.93 | wind | 7 | 43200 | > th | dose independent | sin | 11 | NA |
| 455 | 242.94 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 8 |
| 457 | 242.94 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 2 |
| 475 | 242.95 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 485 | 242.96 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 15 |
| 504 | 242.98 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 10 |
| 505 | 242.98 | temperature | 15 | 4320 | > th | dose dependent | no | NA | NA |
| 516 | 242.98 | temperature | 15 | 4320 | > th | dose dependent | rect. | 8 | 21 |
| 526 | 242.99 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 8 |
| 564 | 243.00 | temperature | 15 | 4320 | > th | dose dependent | rect. | 11 | 23 |
| 611 | 243.04 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 10 |
| 647 | 243.06 | wind | 7 | 43200 | < th | dose independent | sin | 11 | NA |
| 759 | 243.12 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 2 |
| 760 | 243.12 | temperature | 30 | 4320 | < th | dose dependent | rect. | 6 | 2 |
| 807 | 243.15 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 6 |
| 820 | 243.16 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 837 | 243.17 | temperature | 15 | 4320 | > th | dose dependent | rect. | 6 | 4 |
| 852 | 243.18 | temperature | 30 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 879 | 243.20 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 7 |
| 881 | 243.20 | wind | 5 | 43200 | > th | dose dependent | sin | 11 | NA |
| 885 | 243.20 | temperature | 15 | 4320 | > th | dose dependent | rect. | 14 | 13 |
| 935 | 243.23 | temperature | 15 | 4320 | > th | dose dependent | sin | 15 | NA |
| 954 | 243.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 13 |