FiT-DB / Search/ Help/ Sample detail

Os01g0974300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.76 (0.0136) R2 : 0.426
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.563 (0.0352) R2dC : 0.324 R2C : 0.299
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.253 (0.0286) R2dN8 : 0.127 R2N8 : 0.102
σ : 0.257
deviance : 30.12
__
_____
C
peak time of C : 7.42
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.96 0.233 8.75 0.222 0.623 0.486 -0.323 1.52 0.249 6.48 10 10 -- --
26.8 0.243 8.77 0.00971 0.616 0.542 -0.458 -- 0.187 6.32 10 10 -- --
25.17 0.235 8.75 0.226 0.62 0.493 -- 1.59 0.252 6.5 10 10 -- --
27.27 0.245 8.77 0.00983 0.611 0.517 -- -- 0.192 6.53 10 10 -- --
43.82 0.31 8.75 0.32 -- 0.112 -- 1.42 0.313 -- 20 6 -- --
29.64 0.255 8.76 0.114 0.563 -- -0.268 -- 0.264 7.28 -- -- -- --
29.8 0.256 8.76 0.109 0.562 -- -- -- 0.265 7.43 -- -- -- --
45.7 0.316 8.78 0.0723 -- 0.255 -- -- 0.24 -- 10 10 -- --
27.27 0.245 8.77 -- 0.611 0.522 -- -- 0.191 6.52 10 10 -- --
46.63 0.319 8.77 0.118 -- -- -- -- 0.274 -- -- -- -- --
30.12 0.257 8.76 -- 0.563 -- -- -- 0.253 7.42 -- -- -- --
45.83 0.316 8.78 -- -- 0.278 -- -- 0.229 -- 10 10 -- --
46.99 0.32 8.77 -- -- -- -- -- 0.261 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 24.30 temperature 10 10 > th dose dependent rect. 3 23
4 24.53 temperature 20 10 > th dose dependent rect. 5 21
6 24.59 temperature 20 10 > th dose dependent rect. 7 17
7 24.59 temperature 20 10 > th dose dependent rect. 7 19
12 24.67 temperature 20 10 > th dose dependent rect. 5 19
23 24.76 temperature 20 10 > th dose dependent rect. 7 23
32 24.84 temperature 20 10 > th dose dependent rect. 19 23
47 24.90 temperature 20 10 > th dose dependent rect. 1 23
49 24.90 temperature 15 10 > th dose dependent rect. 21 23
57 24.94 temperature 20 10 > th dose dependent rect. 9 23
58 24.95 temperature 20 10 > th dose dependent rect. 9 15
60 24.96 temperature 10 10 > th dose dependent no NA NA
78 25.00 temperature 20 10 > th dose dependent rect. 9 17
89 25.03 temperature 20 10 > th dose dependent rect. 15 23
90 25.03 temperature 30 10 < th dose dependent rect. 13 23
91 25.03 temperature 30 10 < th dose dependent rect. 17 23
95 25.05 atmosphere 1000 720 > th dose independent rect. 17 10
102 25.06 temperature 20 10 > th dose dependent rect. 23 23
107 25.07 temperature 30 10 < th dose dependent rect. 11 23
127 25.11 temperature 30 10 < th dose dependent no NA NA
131 25.12 temperature 30 10 < th dose dependent rect. 15 23
138 25.13 temperature 30 10 < th dose dependent rect. 23 23
141 25.14 temperature 30 90 < th dose dependent rect. 12 17
143 25.14 temperature 20 10 > th dose dependent rect. 13 23
148 25.15 temperature 30 10 < th dose dependent rect. 9 23
149 25.15 temperature 30 10 < th dose dependent rect. 19 23
192 25.23 temperature 30 10 < th dose dependent rect. 1 23
198 25.24 temperature 20 10 > th dose dependent rect. 17 23
229 25.31 temperature 30 10 < th dose dependent rect. 7 23
230 25.31 temperature 30 10 < th dose dependent rect. 21 23
235 25.33 atmosphere 1000 10 > th dose independent sin 10 NA
237 25.33 atmosphere 1000 270 > th dose independent sin 10 NA
238 25.33 temperature 30 10 < th dose dependent rect. 12 19
285 25.39 temperature 30 90 < th dose dependent rect. 15 14
291 25.40 temperature 10 10 > th dose dependent sin 20 NA
319 25.43 temperature 20 10 > th dose dependent rect. 9 21
320 25.43 temperature 20 10 > th dose dependent rect. 21 21
325 25.43 temperature 20 10 > th dose dependent rect. 11 23
404 25.53 temperature 30 10 < th dose dependent rect. 17 19
423 25.55 temperature 25 90 < th dose independent rect. 12 17
435 25.56 radiation 10 90 < th dose independent rect. 6 23
464 25.58 atmosphere 1000 90 > th dose independent rect. 17 11
466 25.58 temperature 30 10 < th dose dependent sin 16 NA
468 25.58 temperature 30 10 < th dose dependent rect. 17 17
473 25.58 radiation 20 10 < th dose dependent rect. 6 23
493 25.61 atmosphere 1000 90 > th dose independent rect. 17 16
509 25.62 atmosphere 1000 90 > th dose independent rect. 17 14
510 25.62 temperature 25 10 < th dose independent rect. 13 16
540 25.64 atmosphere 1000 720 > th dose independent rect. 20 15
552 25.65 atmosphere 1000 270 > th dose independent sin 5 NA
569 25.65 radiation 20 90 < th dose dependent rect. 5 23
582 25.66 temperature 30 10 < th dose dependent rect. 3 23
620 25.69 atmosphere 1000 720 > th dose independent rect. 17 1
655 25.71 temperature 25 90 < th dose independent rect. 15 14
681 25.73 atmosphere 1000 30 > th dose independent sin 16 NA
685 25.73 temperature 25 90 < th dose independent rect. 12 19
720 25.75 temperature 25 10 < th dose independent rect. 12 22
734 25.76 atmosphere 1000 10 > th dose independent sin 3 NA
788 25.78 atmosphere 1000 270 > th dose independent rect. 22 11
808 25.78 radiation 20 10 < th dose dependent rect. 17 23
980 25.87 temperature 10 720 > th dose dependent rect. 4 11
995 25.88 temperature 25 10 > th dose independent rect. 7 23