Os01g0974200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RicMT (Metallothionein-like protein).
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Os01g0974200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RicMT (Metallothionein-like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.99 | 0.456 | 15.6 | -2.97 | 0.146 | -2.53 | 2.27 | -2.28 | -0.183 | 8.13 | 0.5652 | 1481 | -- | -- |
| 95.02 | 0.454 | 15.6 | -3.11 | 0.194 | -1.97 | 2.36 | -- | -0.212 | 8.41 | 1.634 | 1483 | -- | -- |
| 108.07 | 0.484 | 15.6 | -2.78 | 0.151 | -3.08 | -- | -4.19 | -0.184 | 4.62 | 0.2479 | 1495 | -- | -- |
| 112.46 | 0.494 | 15.6 | -3.03 | 0.178 | -1.93 | -- | -- | -0.215 | 9.4 | 1.666 | 1471 | -- | -- |
| 108.41 | 0.485 | 15.6 | -2.79 | -- | -2.95 | -- | -4.06 | -0.149 | -- | 0.2264 | 1489 | -- | -- |
| 136.59 | 0.548 | 15.6 | -2.71 | 0.331 | -- | 2.16 | -- | 0.0214 | 8.81 | -- | -- | -- | -- |
| 150.63 | 0.575 | 15.6 | -2.63 | 0.351 | -- | -- | -- | 0.0266 | 10.7 | -- | -- | -- | -- |
| 113.93 | 0.497 | 15.6 | -3.03 | -- | -2.01 | -- | -- | -0.228 | -- | 1.72 | 1489 | -- | -- |
| 295.98 | 0.801 | 15.6 | -- | 0.342 | -1.41 | -- | -- | -0.145 | 9.27 | 9.999 | 7349 | -- | -- |
| 158.23 | 0.588 | 15.6 | -2.63 | -- | -- | -- | -- | 0.0247 | -- | -- | -- | -- | -- |
| 332.54 | 0.853 | 15.5 | -- | 0.373 | -- | -- | -- | 0.319 | 11.2 | -- | -- | -- | -- |
| 299.86 | 0.807 | 15.6 | -- | -- | -1.39 | -- | -- | -0.131 | -- | 9.99 | 7364 | -- | -- |
| 341.25 | 0.862 | 15.5 | -- | -- | -- | -- | -- | 0.317 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.26 | humidity | 80 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 3 | 95.01 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 6 | 95.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 16 |
| 7 | 95.19 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 18 |
| 8 | 95.20 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 23 | 95.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 13 | 22 |
| 29 | 95.83 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 20 |
| 32 | 95.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 22 |
| 36 | 95.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 37 | 95.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 18 |
| 45 | 95.91 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 49 | 95.96 | humidity | 80 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 55 | 96.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 57 | 96.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 59 | 96.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 60 | 96.01 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 61 | 96.02 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 73 | 96.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 77 | 96.04 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 19 |
| 117 | 96.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 119 | 96.38 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 10 |
| 120 | 96.39 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 12 |
| 127 | 96.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 129 | 96.47 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 137 | 96.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 138 | 96.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 139 | 96.70 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 145 | 96.80 | humidity | 80 | 43200 | < th | dose independent | rect. | 9 | 8 |
| 151 | 96.86 | humidity | 80 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 155 | 96.90 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 4 |
| 172 | 97.01 | humidity | 70 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 174 | 97.02 | radiation | 1 | 1440 | > th | dose independent | rect. | 14 | 16 |
| 192 | 97.12 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 11 |
| 200 | 97.17 | humidity | 70 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 206 | 97.20 | humidity | 80 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 212 | 97.23 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 225 | 97.28 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 22 |
| 231 | 97.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 16 |
| 239 | 97.39 | radiation | 1 | 43200 | > th | dose independent | rect. | 15 | 15 |
| 258 | 97.45 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 16 |
| 269 | 97.50 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 277 | 97.53 | wind | 7 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 293 | 97.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 320 | 97.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 329 | 97.62 | radiation | 1 | 43200 | > th | dose independent | sin | 14 | NA |
| 332 | 97.62 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 21 |
| 343 | 97.65 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 355 | 97.67 | radiation | 1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 367 | 97.70 | radiation | 1 | 43200 | > th | dose independent | rect. | 14 | 20 |
| 370 | 97.71 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 371 | 97.71 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 382 | 97.71 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 391 | 97.73 | radiation | 1 | 43200 | < th | dose independent | sin | 14 | NA |
| 436 | 97.78 | radiation | 1 | 43200 | < th | dose independent | rect. | 14 | 20 |
| 455 | 97.80 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 472 | 97.82 | radiation | 1 | 43200 | > th | dose independent | rect. | 9 | 10 |
| 534 | 97.86 | wind | 7 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 548 | 97.88 | radiation | 1 | 43200 | > th | dose independent | no | NA | NA |
| 549 | 97.88 | radiation | 1 | 43200 | > th | dose independent | rect. | 4 | 15 |
| 616 | 97.91 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 10 |
| 633 | 97.91 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 23 |
| 635 | 97.91 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 672 | 97.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 675 | 97.94 | radiation | 1 | 43200 | < th | dose independent | no | NA | NA |
| 676 | 97.94 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 678 | 97.94 | radiation | 1 | 43200 | < th | dose independent | rect. | 4 | 14 |
| 747 | 97.94 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 19 |
| 862 | 98.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 863 | 98.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 15 |
| 886 | 98.02 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 906 | 98.03 | temperature | 25 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 928 | 98.04 | temperature | 10 | 43200 | > th | dose dependent | rect. | 7 | 1 |