Os01g0974100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amino acid selective channel protein.
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Os01g0974100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amino acid selective channel protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 534.1 | 1.09 | 6.3 | -6.9 | 2.08 | 2.95 | -0.279 | -8.28 | -1.58 | 6.1 | 25.59 | 1296 | -- | -- |
| 571.4 | 1.11 | 6.12 | -5.33 | 2.06 | 2.44 | -0.416 | -- | -1.53 | 5.95 | 20.64 | 5624 | -- | -- |
| 534.25 | 1.08 | 6.3 | -6.91 | 2.08 | 2.96 | -- | -8.34 | -1.58 | 6.11 | 25.63 | 1291 | -- | -- |
| 568.27 | 1.11 | 6.11 | -5.01 | 2.15 | 2.16 | -- | -- | -1.4 | 5.68 | 21.99 | 5671 | -- | -- |
| 752.89 | 1.28 | 6.34 | -6.65 | -- | 3.09 | -- | -6.84 | -1.68 | -- | 24.4 | 1300 | -- | -- |
| 729.88 | 1.27 | 6 | -4.08 | 2.22 | -- | 0.0814 | -- | -0.889 | 5.55 | -- | -- | -- | -- |
| 729.89 | 1.27 | 6 | -4.08 | 2.23 | -- | -- | -- | -0.889 | 5.55 | -- | -- | -- | -- |
| 772.37 | 1.29 | 6.12 | -4.82 | -- | 2.43 | -- | -- | -1.23 | -- | 24.06 | 1297 | -- | -- |
| 1097.12 | 1.54 | 5.84 | -- | 2.09 | 1.2 | -- | -- | -0.169 | 5.96 | 30.6 | 1176 | -- | -- |
| 987.26 | 1.47 | 6.03 | -4 | -- | -- | -- | -- | -0.835 | -- | -- | -- | -- | -- |
| 1167.71 | 1.6 | 5.9 | -- | 2.16 | -- | -- | -- | -0.435 | 5.63 | -- | -- | -- | -- |
| 1321.55 | 1.69 | 5.87 | -- | -- | 1.31 | -- | -- | -0.106 | -- | 30.5 | 1233 | -- | -- |
| 1409.94 | 1.75 | 5.93 | -- | -- | -- | -- | -- | -0.391 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 531.70 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 2 | 531.89 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 7 |
| 43 | 536.82 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 53 | 537.20 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 110 | 540.55 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 14 |
| 242 | 543.68 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 284 | 545.48 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 321 | 547.21 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 323 | 547.27 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 523 | 553.22 | wind | 5 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 526 | 553.24 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 21 |
| 528 | 553.28 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 533 | 553.36 | wind | 5 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 536 | 553.42 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 21 |
| 541 | 553.52 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 560 | 553.83 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 21 |
| 584 | 554.19 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 590 | 554.31 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 591 | 554.35 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 595 | 554.42 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 16 |
| 616 | 554.80 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 623 | 554.87 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 625 | 554.88 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 686 | 555.79 | wind | 5 | 43200 | < th | dose independent | sin | 3 | NA |
| 691 | 555.85 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 698 | 555.94 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 782 | 556.93 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 784 | 556.97 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 835 | 557.86 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 838 | 557.88 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 858 | 558.22 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 864 | 558.31 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 11 |
| 866 | 558.32 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 883 | 558.46 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 937 | 558.95 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 977 | 559.33 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 16 |