Os01g0973500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0973500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Protein kinase APK1A, chloroplast precursor (EC 2.7.1.-).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 60.85 | 0.366 | 7.57 | 0.125 | 1.16 | -0.949 | 0.964 | 0.5 | -0.314 | 5.58 | 0.4725 | 97 | -- | -- |
| 61.92 | 0.366 | 7.58 | 0.118 | 1.23 | -1.05 | 1.2 | -- | -0.34 | 5.16 | 0.5295 | 101 | -- | -- |
| 62.97 | 0.37 | 7.57 | 0.132 | 1.15 | -0.867 | -- | 0.609 | -0.318 | 5.9 | 0.48 | 97 | -- | -- |
| 65.18 | 0.376 | 7.57 | 0.14 | 1.16 | -0.869 | -- | -- | -0.315 | 5.9 | 0.4707 | 97 | -- | -- |
| 114.95 | 0.502 | 7.58 | 0.164 | -- | -0.798 | -- | 0.639 | -0.246 | -- | 0.87 | 57 | -- | -- |
| 75.41 | 0.407 | 7.54 | 0.218 | 1.39 | -- | -0.274 | -- | -0.242 | 8.97 | -- | -- | -- | -- |
| 75.67 | 0.407 | 7.54 | 0.208 | 1.39 | -- | -- | -- | -0.243 | 8.95 | -- | -- | -- | -- |
| 117.37 | 0.507 | 7.58 | 0.177 | -- | -0.796 | -- | -- | -0.243 | -- | 1.08 | 12 | -- | -- |
| 65.72 | 0.378 | 7.57 | -- | 1.17 | -0.881 | -- | -- | -0.325 | 5.85 | 0.4375 | 97 | -- | -- |
| 186.71 | 0.638 | 7.57 | 0.207 | -- | -- | -- | -- | -0.234 | -- | -- | -- | -- | -- |
| 76.81 | 0.41 | 7.54 | -- | 1.39 | -- | -- | -- | -0.266 | 8.94 | -- | -- | -- | -- |
| 118.2 | 0.508 | 7.58 | -- | -- | -0.798 | -- | -- | -0.263 | -- | 1.08 | 12 | -- | -- |
| 187.85 | 0.64 | 7.58 | -- | -- | -- | -- | -- | -0.257 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.83 | radiation | 1.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 2 | 53.97 | radiation | 1.0 | 90 | < th | dose independent | sin | 10 | NA |
| 6 | 54.96 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 9 | 55.25 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 15 |
| 12 | 55.29 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 11 |
| 14 | 55.38 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 19 | 18 |
| 19 | 56.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 15 |
| 22 | 56.06 | temperature | 15.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 24 | 56.14 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 18 |
| 42 | 57.20 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 14 |
| 43 | 57.20 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 44 | 57.23 | wind | 9.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 51 | 57.25 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 52 | 57.25 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 54 | 57.25 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 58 | 57.25 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 59 | 57.25 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 65 | 57.58 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 10 |
| 66 | 57.58 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 67 | 57.62 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 77 | 58.02 | radiation | 1.0 | 90 | > th | dose independent | sin | 10 | NA |
| 94 | 58.38 | wind | 9.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 110 | 58.76 | radiation | 1.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 136 | 59.03 | temperature | 15.0 | 90 | > th | dose independent | rect. | 9 | 20 |
| 150 | 59.25 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 170 | 59.38 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 177 | 59.47 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 189 | 59.69 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 13 |
| 237 | 60.14 | temperature | 15.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 242 | 60.23 | wind | 3.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 245 | 60.25 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 13 |
| 250 | 60.31 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 274 | 60.50 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 275 | 60.50 | wind | 7.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 291 | 60.59 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 5 | 1 |
| 295 | 60.62 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 320 | 60.76 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 334 | 60.79 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 17 |
| 360 | 60.86 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 398 | 61.02 | temperature | 30.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 403 | 61.08 | temperature | 20.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 406 | 61.09 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 4 |
| 407 | 61.09 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 415 | 61.13 | wind | 9.0 | 90 | < th | dose independent | rect. | 7 | 23 |
| 433 | 61.18 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 435 | 61.18 | humidity | 50.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 436 | 61.18 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 4 |
| 437 | 61.18 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 5 | 4 |
| 468 | 61.31 | humidity | 70.0 | 10 | > th | dose independent | rect. | 19 | 11 |
| 523 | 61.38 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 5 | 4 |
| 525 | 61.39 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 14 |
| 555 | 61.45 | radiation | 1.0 | 90 | < th | dose dependent | no | NA | NA |
| 575 | 61.51 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 14 |
| 599 | 61.58 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 602 | 61.59 | wind | 9.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 603 | 61.59 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 605 | 61.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 14 |
| 606 | 61.60 | temperature | 15.0 | 10 | > th | dose independent | rect. | 8 | 22 |
| 607 | 61.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 610 | 61.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 617 | 61.68 | wind | 9.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 619 | 61.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 20 | 10 |
| 620 | 61.68 | humidity | 50.0 | 10 | > th | dose independent | rect. | 20 | 10 |
| 627 | 61.68 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 629 | 61.68 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 14 |
| 635 | 61.72 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 21 |
| 641 | 61.75 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 645 | 61.77 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 4 |
| 658 | 61.87 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 14 |
| 670 | 61.94 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 19 | 10 |
| 684 | 62.04 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 6 | 1 |
| 687 | 62.04 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 688 | 62.05 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 691 | 62.05 | temperature | 10.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 693 | 62.05 | temperature | 30.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 694 | 62.05 | humidity | 50.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 696 | 62.05 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 698 | 62.05 | radiation | 40.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 700 | 62.05 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 704 | 62.07 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 3 |
| 716 | 62.09 | radiation | 20.0 | 90 | < th | dose independent | rect. | 5 | 20 |
| 717 | 62.09 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 20 |
| 718 | 62.09 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 20 |
| 720 | 62.10 | wind | 1.0 | 270 | > th | dose independent | rect. | 8 | 19 |
| 722 | 62.10 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 20 | 10 |
| 752 | 62.22 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 764 | 62.25 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 1 |
| 778 | 62.28 | humidity | 70.0 | 90 | > th | dose independent | rect. | 5 | 13 |
| 793 | 62.32 | wind | 1.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 794 | 62.32 | wind | 1.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 810 | 62.35 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 3 |
| 824 | 62.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 20 | 10 |
| 831 | 62.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 20 | 10 |
| 880 | 62.45 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 10 |
| 902 | 62.50 | temperature | 25.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 906 | 62.51 | wind | 1.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 920 | 62.54 | humidity | 90.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 921 | 62.54 | wind | 3.0 | 10 | < th | dose independent | rect. | 6 | 3 |
| 929 | 62.55 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 17 |
| 931 | 62.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 934 | 62.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 938 | 62.56 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 943 | 62.56 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 20 | 11 |
| 944 | 62.56 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 20 | 11 |
| 948 | 62.56 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 13 |
| 964 | 62.60 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 2 |
| 970 | 62.60 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 2 |
| 975 | 62.61 | wind | 9.0 | 10 | < th | dose dependent | rect. | 6 | 3 |
| 982 | 62.63 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 998 | 62.66 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 2 |
| 1000 | 62.66 | temperature | 30.0 | 10 | < th | dose independent | rect. | 6 | 2 |