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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0973200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Kinetochore-Ndc80 subunit Spc25 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.27 (0.0377) R2 : 0.737
β1 : -2.23 (0.139) R2dD : 0.164 R2D : 0.113
β2 : 2.45 (0.0919) R2dC : 0.413 R2C : 0.403
β3 : -0.709 (0.0859) R2dE : 0.0474 R2E : 0.0907
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.861 (0.0855) R2dN8 : 0.0926 R2N8 : 0.0723
σ : 0.688
deviance : 218.46
__
_____
C
peak time of C : 20.8
E
wheather : temperature
threshold : 23.1
memory length : 200
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
203.65 0.67 5.21 -1.63 2.45 -0.715 1.04 1.69 -0.689 20.7 23.44 126 -- --
218.64 0.689 5.25 -2.06 2.56 -0.722 0.839 -- -0.777 20.7 23.3 230 -- --
206.96 0.67 5.2 -1.62 2.49 -0.737 -- 1.71 -0.661 20.7 23.4 209 -- --
218.46 0.688 5.27 -2.23 2.45 -0.709 -- -- -0.861 20.8 23.1 200 -- --
520.65 1.07 5.18 -1.98 -- -1.05 -- 0.614 -0.78 -- 22.41 69 -- --
247.41 0.737 5.34 -2.5 2.47 -- 0.739 -- -1.14 21 -- -- -- --
249.29 0.739 5.34 -2.53 2.47 -- -- -- -1.14 21 -- -- -- --
514.68 1.06 5.2 -2.22 -- -1.13 -- -- -0.836 -- 22.2 47 -- --
342.39 0.862 5.19 -- 2.57 -0.976 -- -- -0.532 20.5 23.2 215 -- --
599.13 1.14 5.27 -2.52 -- -- -- -- -1.16 -- -- -- -- --
417.48 0.956 5.28 -- 2.47 -- -- -- -0.862 20.9 -- -- -- --
634.22 1.17 5.1 -- -- -1.3 -- -- -0.476 -- 23 16 -- --
767 1.29 5.21 -- -- -- -- -- -0.878 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 201.24 wind 1 43200 > th dose dependent rect. 13 1
2 201.77 wind 5 43200 > th dose independent rect. 14 1
3 201.77 wind 1 43200 < th dose dependent rect. 2 1
4 201.94 wind 9 43200 < th dose dependent rect. 13 1
5 202.20 temperature 20 720 > th dose dependent rect. 17 8
6 202.28 wind 5 43200 < th dose independent rect. 14 1
9 202.44 temperature 20 720 > th dose dependent rect. 17 12
17 202.88 temperature 20 720 > th dose dependent sin 14 NA
20 203.07 temperature 30 30 < th dose dependent rect. 5 23
25 203.32 temperature 25 90 < th dose dependent rect. 11 23
34 203.87 temperature 20 720 > th dose dependent rect. 10 19
45 204.14 wind 1 43200 < th dose dependent rect. 24 1
49 204.21 temperature 25 10 < th dose dependent rect. 13 23
54 204.31 wind 1 43200 < th dose dependent rect. 9 2
56 204.35 temperature 20 720 > th dose dependent rect. 18 3
74 204.86 temperature 25 10 < th dose dependent rect. 19 23
77 204.88 temperature 25 10 < th dose dependent rect. 23 23
83 204.95 temperature 25 90 < th dose dependent rect. 15 20
91 205.09 temperature 25 10 < th dose dependent no NA NA
94 205.11 temperature 25 10 < th dose dependent rect. 21 23
95 205.12 temperature 25 10 < th dose dependent rect. 11 23
102 205.20 temperature 20 270 > th dose dependent rect. 14 22
105 205.24 temperature 25 10 < th dose dependent rect. 7 23
106 205.25 temperature 20 10 > th dose dependent sin 10 NA
110 205.32 temperature 25 10 < th dose dependent rect. 9 23
121 205.53 temperature 25 10 < th dose dependent sin 8 NA
122 205.53 temperature 25 10 < th dose dependent rect. 18 18
127 205.59 temperature 25 90 < th dose dependent rect. 21 23
135 205.65 temperature 25 90 < th dose dependent rect. 17 18
136 205.66 radiation 40 43200 > th dose independent rect. 10 1
138 205.68 radiation 40 43200 > th dose independent rect. 10 3
144 205.70 wind 1 43200 > th dose independent rect. 2 1
158 205.84 radiation 40 43200 > th dose dependent rect. 12 1
160 205.86 temperature 25 10 < th dose dependent rect. 3 23
165 205.95 temperature 30 10 < th dose dependent rect. 7 21
185 206.04 temperature 25 30 < th dose dependent rect. 1 23
187 206.07 temperature 30 720 < th dose dependent rect. 18 7
206 206.21 temperature 25 90 < th dose dependent rect. 19 16
236 206.43 radiation 40 43200 < th dose independent rect. 13 1
269 206.52 temperature 30 720 < th dose dependent sin 14 NA
278 206.55 radiation 40 43200 > th dose independent rect. 12 1
315 206.70 radiation 40 43200 < th dose independent rect. 10 4
349 206.93 radiation 30 43200 < th dose independent rect. 9 2
365 207.01 radiation 40 43200 > th dose independent sin 7 NA
410 207.09 humidity 80 43200 > th dose independent rect. 21 1
412 207.11 radiation 10 43200 > th dose dependent rect. 10 1
426 207.19 temperature 25 4320 > th dose independent rect. 17 1
430 207.20 humidity 70 43200 < th dose dependent rect. 10 1
451 207.24 temperature 25 4320 < th dose independent rect. 17 1
457 207.28 temperature 25 270 < th dose dependent sin 11 NA
506 207.48 wind 1 43200 < th dose dependent rect. 23 3
552 207.60 radiation 40 43200 > th dose independent no NA NA
703 207.66 radiation 1 14400 < th dose dependent rect. 2 3
709 207.68 temperature 25 10 < th dose dependent rect. 22 14
720 207.72 radiation 40 43200 > th dose independent rect. 12 23
727 207.74 temperature 25 90 < th dose dependent rect. 21 14
753 207.88 radiation 1 14400 < th dose dependent rect. 4 1
755 207.88 temperature 30 720 < th dose dependent rect. 13 17
773 207.96 temperature 25 10 < th dose dependent rect. 22 18
798 208.00 wind 5 43200 > th dose independent rect. 16 1
801 208.01 temperature 30 720 < th dose dependent rect. 15 12
802 208.01 temperature 25 90 < th dose dependent rect. 21 20
830 208.07 radiation 40 43200 < th dose independent rect. 21 17
868 208.14 humidity 80 43200 > th dose independent rect. 20 3
891 208.20 humidity 80 43200 < th dose independent rect. 21 1
997 208.40 wind 9 14400 > th dose dependent rect. 18 21