Os01g0971000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0971000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 87.24 | 0.439 | 12.6 | -2.64 | 2.58 | 1.04 | 2.78 | 5.53 | -0.228 | 17.5 | 23.13 | 324 | -- | -- |
| 117.32 | 0.504 | 12.6 | -2.01 | 2.57 | 0.221 | 1.64 | -- | -0.107 | 17.6 | 48.58 | 480 | -- | -- |
| 98.38 | 0.462 | 12.6 | -3.08 | 2.6 | 0.449 | -- | 5.13 | -0.291 | 17.5 | 26.16 | 1443 | -- | -- |
| 123.47 | 0.518 | 12.6 | -2.02 | 2.54 | 0.165 | -- | -- | -0.115 | 17.5 | 35.3 | 1991 | -- | -- |
| 408.08 | 0.946 | 12.6 | -2.78 | -- | -1.58 | -- | 2.11 | -0.53 | -- | 32.2 | 1313 | -- | -- |
| 117.88 | 0.509 | 12.6 | -2.05 | 2.52 | -- | 1.58 | -- | -0.147 | 17.5 | -- | -- | -- | -- |
| 124.07 | 0.522 | 12.6 | -2.06 | 2.53 | -- | -- | -- | -0.14 | 17.5 | -- | -- | -- | -- |
| 412.25 | 0.95 | 12.6 | -2.46 | -- | -1.74 | -- | -- | -0.433 | -- | 37.5 | 2718 | -- | -- |
| 147.58 | 0.566 | 12.4 | -- | 2.52 | 1.51 | -- | -- | 0.541 | 17.6 | 35.7 | 47520 | -- | -- |
| 455.88 | 0.998 | 12.5 | -2.14 | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
| 235.77 | 0.718 | 12.5 | -- | 2.56 | -- | -- | -- | 0.0893 | 17.5 | -- | -- | -- | -- |
| 477.19 | 1.02 | 12.4 | -- | -- | 1.61 | -- | -- | 0.517 | -- | 47.56 | 47520 | -- | -- |
| 576.9 | 1.12 | 12.5 | -- | -- | -- | -- | -- | 0.0361 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 89.35 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 16 |
| 5 | 89.62 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 6 | 89.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 20 |
| 11 | 89.75 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 12 | 89.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 41 | 90.36 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 22 |
| 74 | 90.70 | temperature | 25 | 270 | < th | dose dependent | rect. | 5 | 23 |
| 75 | 90.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 19 |
| 77 | 90.75 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 100 | 91.13 | temperature | 10 | 1440 | > th | dose dependent | rect. | 7 | 18 |
| 262 | 91.76 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 7 |
| 343 | 91.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 6 | 6 |
| 347 | 91.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 366 | 91.99 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 367 | 91.99 | temperature | 25 | 270 | < th | dose dependent | rect. | 10 | 23 |
| 443 | 92.11 | temperature | 10 | 1440 | > th | dose dependent | sin | 18 | NA |
| 453 | 92.12 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 472 | 92.15 | temperature | 30 | 1440 | < th | dose dependent | sin | 18 | NA |
| 498 | 92.17 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 511 | 92.20 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 518 | 92.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 571 | 92.26 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 581 | 92.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 697 | 92.41 | temperature | 10 | 1440 | > th | dose dependent | sin | 2 | NA |
| 884 | 92.62 | temperature | 30 | 1440 | < th | dose dependent | sin | 2 | NA |
| 992 | 92.74 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |