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Os01g0970900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein prenyltransferase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.63 (0.0274) R2 : 0.854
β1 : 2.75 (0.1) R2dD : 0.249 R2D : 0.192
β2 : 2.14 (0.0794) R2dC : 0.312 R2C : 0.489
β3 : -1.24 (0.0716) R2dE : 0.13 R2E : 0.308
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.539 (0.0589) R2dN8 : 0.0363 R2N8 : -0.0216
σ : 0.513
deviance : 121.16
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_____
C
peak time of C : 15.3
E
wheather : radiation
threshold : 32.32
memory length : 84
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 3.38
open length of G : 5.73

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
119.17 0.513 8.64 2.69 2.15 -1.24 0.293 -0.635 0.528 15.3 31.14 94 3.37 5.7
120.25 0.511 8.64 2.74 2.17 -1.22 0.462 -- 0.535 15.3 32.12 91 3.35 5.73
119.4 0.509 8.63 2.69 2.15 -1.24 -- -0.759 0.529 15.3 31.14 93 3.37 5.7
121.16 0.513 8.63 2.75 2.14 -1.24 -- -- 0.539 15.3 32.32 84 3.38 5.73
280.05 0.779 8.6 2.65 -- -2.13 -- -0.59 0.613 -- 59.37 59 2.33 6.4
165.57 0.603 8.68 2.7 3 -- 0.78 -- 0.426 16.3 -- -- -- --
167.24 0.606 8.68 2.7 3.01 -- -- -- 0.43 16.3 -- -- -- --
253.97 0.742 8.62 2.84 -- -2.19 -- -- 0.556 -- 40.38 46 1.52 7.24
320.2 0.833 8.69 -- 2.05 -1.29 -- -- 0.324 15.3 30.83 92 3.5 5.6
654.22 1.2 8.66 2.58 -- -- -- -- 0.35 -- -- -- -- --
359.91 0.887 8.75 -- 2.96 -- -- -- 0.129 16.3 -- -- -- --
447.27 0.985 8.68 -- -- -2.08 -- -- 0.28 -- 32.14 60 1.33 8
830.39 1.35 8.73 -- -- -- -- -- 0.0633 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.40 radiation 30.0 90 < th dose independent rect. 3 6
2 123.06 wind 5.0 270 < th dose independent rect. 3 3
3 123.10 wind 5.0 90 < th dose independent rect. 3 6
5 123.75 humidity 70.0 90 > th dose independent rect. 3 6
7 123.88 precipitation 0.1 90 < th dose independent rect. 3 6
8 123.88 precipitation 0.1 90 < th dose dependent rect. 3 6
9 124.02 temperature 30.0 90 < th dose independent rect. 3 6
11 124.07 wind 9.0 90 < th dose independent rect. 9 18
12 124.26 wind 5.0 270 < th dose independent rect. 4 1
13 124.34 precipitation 0.1 90 < th dose independent rect. 9 18
14 124.34 precipitation 0.1 90 < th dose dependent rect. 9 18
16 124.49 precipitation 0.1 270 < th dose independent rect. 3 3
17 124.49 precipitation 0.1 270 < th dose dependent rect. 3 3
19 124.59 temperature 10.0 90 > th dose independent rect. 3 6
22 124.59 atmosphere 995.0 90 > th dose independent rect. 3 6
23 124.59 atmosphere 1015.0 90 < th dose independent rect. 3 6
24 124.59 temperature 10.0 90 > th dose independent rect. 9 18
27 124.84 wind 9.0 270 < th dose independent rect. 6 21
30 125.34 atmosphere 1010.0 270 < th dose independent rect. 3 3
31 125.38 radiation 10.0 270 < th dose dependent rect. 3 4
32 125.39 temperature 10.0 270 > th dose dependent rect. 3 3
34 125.54 temperature 10.0 270 > th dose independent rect. 3 3
36 125.54 temperature 30.0 270 < th dose independent rect. 3 3
37 125.54 humidity 50.0 270 > th dose independent rect. 3 3
40 125.54 atmosphere 995.0 270 > th dose independent rect. 3 3
42 125.54 radiation 20.0 270 < th dose independent rect. 3 3
45 125.54 temperature 10.0 270 > th dose independent rect. 6 21
46 125.60 radiation 40.0 270 < th dose dependent rect. 3 3
51 125.71 radiation 30.0 270 < th dose dependent rect. 2 6
57 125.90 wind 9.0 90 < th dose dependent rect. 3 6
60 125.99 wind 9.0 270 < th dose independent rect. 7 19
77 126.18 radiation 1.0 270 < th dose dependent rect. 4 1
95 126.42 precipitation 0.1 270 < th dose independent rect. 6 21
96 126.42 precipitation 0.1 270 < th dose dependent rect. 6 21
113 126.50 temperature 10.0 90 > th dose dependent rect. 3 5
134 126.64 atmosphere 1000.0 270 > th dose dependent rect. 4 1
136 126.65 temperature 10.0 270 > th dose independent rect. 4 1
138 126.65 temperature 30.0 270 < th dose independent rect. 4 1
139 126.65 humidity 50.0 270 > th dose independent rect. 4 1
142 126.65 atmosphere 995.0 270 > th dose independent rect. 4 1
143 126.65 atmosphere 1010.0 270 < th dose independent rect. 4 1
145 126.65 radiation 20.0 270 < th dose independent rect. 4 1
148 126.65 temperature 10.0 270 > th dose independent rect. 5 23
149 126.68 radiation 40.0 270 < th dose dependent rect. 4 1
157 126.83 radiation 1.0 270 < th dose independent rect. 4 1
170 126.94 atmosphere 1000.0 10 > th dose dependent rect. 4 5
195 127.12 wind 9.0 270 < th dose dependent rect. 3 3
222 127.91 temperature 10.0 270 > th dose dependent rect. 4 1
230 128.00 wind 9.0 270 < th dose dependent rect. 4 1
240 128.15 atmosphere 995.0 90 > th dose independent rect. 9 18
244 128.18 wind 1.0 270 > th dose independent rect. 3 2
248 128.32 precipitation 0.1 270 < th dose independent rect. 1 7
249 128.32 precipitation 0.1 270 < th dose dependent rect. 1 7
254 128.43 humidity 70.0 270 > th dose independent rect. 1 7
271 128.55 temperature 10.0 1440 > th dose independent rect. 5 5
274 128.55 atmosphere 995.0 1440 > th dose independent rect. 5 5
275 128.55 atmosphere 1015.0 1440 < th dose independent rect. 5 5
276 128.55 temperature 10.0 1440 > th dose independent rect. 10 19
293 128.77 wind 1.0 270 > th dose independent rect. 2 5
302 128.82 humidity 70.0 90 > th dose independent rect. 3 8
319 129.10 temperature 10.0 270 > th dose independent rect. 1 7
321 129.10 temperature 30.0 270 < th dose independent rect. 1 7
322 129.10 humidity 50.0 270 > th dose independent rect. 1 7
324 129.10 atmosphere 995.0 270 > th dose independent rect. 1 7
325 129.10 atmosphere 1015.0 270 < th dose independent rect. 1 7
330 129.13 humidity 50.0 270 > th dose dependent rect. 3 3
336 129.18 humidity 50.0 270 > th dose dependent rect. 4 1
352 129.30 atmosphere 1000.0 270 > th dose dependent rect. 3 3
369 129.44 atmosphere 995.0 270 > th dose independent rect. 7 19
442 129.82 atmosphere 995.0 30 > th dose dependent rect. 9 19
459 129.98 atmosphere 995.0 270 > th dose independent rect. 6 21
477 130.04 radiation 1.0 270 < th dose independent rect. 3 9
483 130.12 humidity 50.0 90 > th dose dependent rect. 3 6
489 130.18 atmosphere 1000.0 270 > th dose independent rect. 20 6
509 130.32 radiation 10.0 270 < th dose dependent rect. 3 10
516 130.45 atmosphere 1005.0 270 > th dose independent rect. 4 1
545 130.64 radiation 1.0 270 < th dose independent rect. 3 14
569 130.92 atmosphere 1005.0 30 > th dose independent rect. 4 5
584 131.17 temperature 15.0 270 > th dose independent rect. 15 16
610 131.42 humidity 50.0 270 > th dose dependent rect. 20 6
620 131.47 radiation 40.0 270 < th dose dependent rect. 15 16
633 131.59 atmosphere 1005.0 270 > th dose independent rect. 3 3
653 131.69 atmosphere 1010.0 270 < th dose independent rect. 12 9
654 131.70 temperature 15.0 270 > th dose independent rect. 11 10
661 131.80 atmosphere 995.0 270 > th dose dependent rect. 20 6
687 131.94 radiation 40.0 90 < th dose independent rect. 3 19
700 132.01 radiation 40.0 90 < th dose dependent rect. 13 20
717 132.22 atmosphere 1000.0 270 > th dose independent rect. 22 3
723 132.26 radiation 40.0 90 < th dose dependent rect. 15 18
731 132.34 precipitation 0.1 270 < th dose independent rect. 3 16
735 132.34 precipitation 0.1 270 < th dose dependent rect. 3 16
736 132.35 radiation 20.0 90 < th dose independent rect. 3 19
738 132.36 wind 9.0 270 < th dose independent rect. 19 8
742 132.38 temperature 10.0 270 > th dose independent rect. 19 8
743 132.38 temperature 30.0 270 < th dose independent rect. 19 8
744 132.38 humidity 50.0 270 > th dose independent rect. 19 8
746 132.38 radiation 1.0 270 < th dose independent rect. 19 8
751 132.38 temperature 10.0 270 > th dose independent rect. 3 16
752 132.38 atmosphere 1015.0 270 < th dose independent rect. 3 16
754 132.38 radiation 1.0 270 < th dose dependent rect. 19 8
773 132.54 atmosphere 995.0 270 > th dose dependent rect. 22 3
797 132.69 precipitation 0.1 270 < th dose independent rect. 7 8
799 132.69 precipitation 0.1 270 < th dose dependent rect. 7 8
801 132.70 wind 9.0 270 < th dose independent rect. 7 8
802 132.72 radiation 20.0 90 < th dose independent rect. 15 18
814 132.80 radiation 40.0 90 < th dose dependent rect. 3 19
816 132.87 precipitation 0.1 270 < th dose independent rect. 19 8
817 132.87 precipitation 0.1 270 < th dose dependent rect. 19 8
820 132.88 radiation 30.0 270 < th dose independent rect. 15 16
837 133.01 temperature 10.0 270 > th dose independent rect. 21 14
838 133.01 atmosphere 995.0 270 > th dose independent rect. 21 14
839 133.01 wind 1.0 270 > th dose independent rect. 7 19
842 133.02 radiation 20.0 90 < th dose independent rect. 13 20
843 133.03 wind 9.0 270 < th dose independent rect. 21 14
844 133.05 temperature 10.0 270 > th dose independent rect. 7 8
845 133.05 atmosphere 1015.0 270 < th dose independent rect. 7 8
855 133.11 wind 9.0 270 < th dose independent rect. 20 6
858 133.12 temperature 10.0 270 > th dose independent rect. 20 6
859 133.12 temperature 30.0 270 < th dose independent rect. 20 6
860 133.12 humidity 50.0 270 > th dose independent rect. 20 6
864 133.12 radiation 1.0 270 < th dose independent rect. 20 6
870 133.12 temperature 10.0 270 > th dose independent rect. 2 18
871 133.12 atmosphere 1015.0 270 < th dose independent rect. 2 18
873 133.12 radiation 1.0 270 < th dose dependent rect. 20 6
916 133.21 radiation 40.0 270 < th dose independent rect. 13 18
924 133.27 temperature 15.0 90 > th dose independent rect. 17 15
929 133.30 atmosphere 995.0 270 > th dose independent rect. 7 8
930 133.30 precipitation 0.1 270 < th dose independent rect. 15 16
932 133.30 precipitation 0.1 270 < th dose dependent rect. 15 16
933 133.32 precipitation 0.1 270 < th dose independent rect. 20 6
936 133.32 precipitation 0.1 270 < th dose dependent rect. 20 6
946 133.40 radiation 20.0 10 < th dose independent rect. 4 18
947 133.41 atmosphere 1000.0 30 > th dose independent rect. 22 6
951 133.42 wind 9.0 1440 < th dose independent rect. 5 4
955 133.42 humidity 50.0 1440 > th dose independent rect. 5 4
964 133.45 temperature 15.0 10 > th dose independent rect. 15 18
969 133.50 humidity 50.0 270 > th dose independent rect. 21 14
982 133.58 humidity 60.0 270 > th dose dependent rect. 21 4