Os01g0968000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pentatricopeptide repeat containing protein.
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Os01g0968000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pentatricopeptide repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.88 | 0.215 | 10.9 | 0.208 | 0.329 | 0.868 | -0.311 | 0.85 | -0.253 | 13.2 | 22.33 | 8 | -- | -- |
| 21.14 | 0.214 | 10.9 | 0.088 | 0.303 | 0.958 | -0.19 | -- | -0.28 | 12.7 | 23.46 | 10 | -- | -- |
| 21.18 | 0.216 | 10.9 | 0.142 | 0.329 | 0.888 | -- | 0.426 | -0.263 | 13.2 | 22.98 | 7 | -- | -- |
| 21.17 | 0.214 | 10.9 | 0.0812 | 0.319 | 0.92 | -- | -- | -0.278 | 13.1 | 23.36 | 6 | -- | -- |
| 25.71 | 0.237 | 10.9 | 0.0349 | -- | 1.21 | -- | 0.12 | -0.323 | -- | 22.98 | 7 | -- | -- |
| 34.38 | 0.275 | 10.9 | 0.244 | 0.667 | -- | 0.125 | -- | -0.149 | 14 | -- | -- | -- | -- |
| 34.43 | 0.275 | 10.9 | 0.248 | 0.667 | -- | -- | -- | -0.149 | 14 | -- | -- | -- | -- |
| 25.53 | 0.235 | 10.9 | 0.0257 | -- | 1.2 | -- | -- | -0.318 | -- | 23.44 | 5 | -- | -- |
| 21.34 | 0.215 | 10.9 | -- | 0.31 | 0.943 | -- | -- | -0.293 | 13 | 23.24 | 10 | -- | -- |
| 61.25 | 0.366 | 10.9 | 0.22 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 36.05 | 0.281 | 10.9 | -- | 0.663 | -- | -- | -- | -0.176 | 14 | -- | -- | -- | -- |
| 25.54 | 0.235 | 10.9 | -- | -- | 1.2 | -- | -- | -0.322 | -- | 23.37 | 5 | -- | -- |
| 62.53 | 0.369 | 10.9 | -- | -- | -- | -- | -- | -0.189 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.08 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 19 |
| 4 | 19.17 | temperature | 10 | 10 | > th | dose dependent | sin | 1 | NA |
| 22 | 19.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 25 | 19.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 22 |
| 36 | 19.89 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 39 | 19.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 20 |
| 40 | 19.91 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 17 |
| 111 | 20.62 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 128 | 20.79 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 18 |
| 164 | 21.10 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 191 | 21.30 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 21 |
| 200 | 21.33 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 209 | 21.40 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 221 | 21.48 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 228 | 21.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 21 |
| 265 | 21.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 274 | 21.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 275 | 21.77 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 348 | 22.10 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 20 |
| 375 | 22.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 420 | 22.26 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 537 | 22.56 | temperature | 25 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 662 | 22.82 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 731 | 22.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 762 | 23.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 763 | 23.09 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 771 | 23.13 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 779 | 23.15 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 797 | 23.19 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 800 | 23.19 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 824 | 23.24 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 878 | 23.36 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 899 | 23.40 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 16 |
| 916 | 23.41 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 966 | 23.45 | temperature | 25 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 971 | 23.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |