Os01g0966200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function YGGT family protein.
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Os01g0966200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function YGGT family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 134.85 | 0.546 | 12.9 | -0.201 | 3.16 | 0.532 | -0.843 | 5.95 | -0.461 | 21.8 | 41.23 | 243 | -- | -- |
| 156.6 | 0.583 | 12.9 | -0.252 | 3.12 | 0.574 | -1.77 | -- | -0.459 | 22.1 | 37.01 | 432 | -- | -- |
| 137.11 | 0.545 | 12.9 | -0.188 | 3.16 | 0.496 | -- | 6.15 | -0.468 | 21.8 | 40.87 | 217 | -- | -- |
| 167.98 | 0.604 | 12.9 | -0.208 | 3.19 | 0.308 | -- | -- | -0.499 | 21.8 | 29.97 | 1869 | -- | -- |
| 481.52 | 1.03 | 12.8 | -0.257 | -- | -2.9 | -- | 2.69 | -0.481 | -- | -29.73 | 1004 | -- | -- |
| 160.52 | 0.594 | 12.8 | -0.254 | 3.16 | -- | -1.62 | -- | -0.436 | 21.8 | -- | -- | -- | -- |
| 170.52 | 0.612 | 12.8 | -0.191 | 3.17 | -- | -- | -- | -0.432 | 21.7 | -- | -- | -- | -- |
| 497.98 | 1.04 | 12.8 | -0.17 | -- | -2.91 | -- | -- | -0.47 | -- | -29.73 | 1004 | -- | -- |
| 169.05 | 0.606 | 12.9 | -- | 3.16 | 0.31 | -- | -- | -0.46 | 21.8 | 28.97 | 1848 | -- | -- |
| 769.81 | 1.3 | 12.8 | -0.162 | -- | -- | -- | -- | -0.436 | -- | -- | -- | -- | -- |
| 171.49 | 0.613 | 12.8 | -- | 3.17 | -- | -- | -- | -0.411 | 21.7 | -- | -- | -- | -- |
| 497.9 | 1.04 | 12.8 | -- | -- | -2.92 | -- | -- | -0.453 | -- | -295.4 | 995 | -- | -- |
| 770.5 | 1.3 | 12.8 | -- | -- | -- | -- | -- | -0.418 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.31 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 17 |
| 6 | 127.48 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 9 |
| 8 | 127.72 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 31 | 129.90 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 10 |
| 36 | 130.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 10 |
| 40 | 130.21 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 57 | 130.89 | temperature | 25 | 720 | < th | dose independent | rect. | 1 | 10 |
| 60 | 130.99 | radiation | 40 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 66 | 131.11 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 70 | 131.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 8 |
| 71 | 131.23 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 81 | 131.46 | temperature | 20 | 270 | > th | dose dependent | sin | 2 | NA |
| 96 | 131.83 | radiation | 40 | 270 | > th | dose dependent | sin | 10 | NA |
| 115 | 132.30 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 124 | 132.38 | radiation | 40 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 154 | 132.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 164 | 132.76 | temperature | 20 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 188 | 133.04 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 227 | 133.37 | temperature | 25 | 720 | > th | dose independent | sin | 5 | NA |
| 265 | 133.82 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 8 |
| 292 | 134.15 | temperature | 25 | 720 | < th | dose independent | sin | 5 | NA |
| 355 | 134.37 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 15 |
| 377 | 134.56 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |
| 437 | 134.78 | radiation | 40 | 270 | < th | dose independent | rect. | 2 | 11 |
| 507 | 135.24 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 508 | 135.28 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 23 |
| 585 | 135.49 | radiation | 40 | 270 | > th | dose dependent | no | NA | NA |
| 736 | 135.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 17 |