Os01g0965800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0965800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 191.75 | 0.651 | 8.22 | 1.49 | 2.53 | -3.05 | -0.538 | -2.23 | 0.213 | 16.8 | 0.7588 | 1570 | -- | -- |
| 192.44 | 0.646 | 8.25 | 1.3 | 2.35 | -2.89 | -0.374 | -- | 0.181 | 16.9 | 1.15 | 1613 | -- | -- |
| 192.29 | 0.646 | 8.23 | 1.44 | 2.44 | -2.9 | -- | -1.35 | 0.22 | 16.8 | 0.7899 | 1594 | -- | -- |
| 192.22 | 0.646 | 8.25 | 1.33 | 2.37 | -2.82 | -- | -- | 0.19 | 16.9 | 1.17 | 1615 | -- | -- |
| 218.63 | 0.689 | 8.18 | 1.49 | -- | -3.17 | -- | -0.266 | 0.324 | -- | 0.8375 | 527 | -- | -- |
| 247.39 | 0.737 | 8.17 | 1.85 | 3.01 | -- | -0.535 | -- | 0.491 | 16 | -- | -- | -- | -- |
| 248.21 | 0.738 | 8.17 | 1.84 | 3.01 | -- | -- | -- | 0.488 | 16 | -- | -- | -- | -- |
| 217.04 | 0.686 | 8.17 | 1.58 | -- | -3.12 | -- | -- | 0.359 | -- | 0.79 | 527 | -- | -- |
| 232.09 | 0.71 | 8.3 | -- | 2.22 | -3.59 | -- | -- | -0.0185 | 17.3 | 0.7694 | 1613 | -- | -- |
| 744.4 | 1.27 | 8.16 | 1.72 | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
| 337.46 | 0.859 | 8.22 | -- | 2.98 | -- | -- | -- | 0.283 | 16 | -- | -- | -- | -- |
| 251.87 | 0.739 | 8.28 | -- | -- | -5.14 | -- | -- | -0.0793 | -- | 0.9007 | 1956 | -- | -- |
| 822.14 | 1.34 | 8.2 | -- | -- | -- | -- | -- | 0.217 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 189.72 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 6 | 193.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 16 |
| 7 | 193.53 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 10 | 194.05 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 11 | 194.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 14 | 194.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 19 | 194.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 21 | 194.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 22 | 194.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 38 | 194.92 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 2 |
| 54 | 195.18 | radiation | 1 | 720 | > th | dose independent | sin | 13 | NA |
| 58 | 195.38 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 22 |
| 59 | 195.40 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 70 | 195.53 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 17 |
| 88 | 195.73 | radiation | 1 | 1440 | < th | dose dependent | sin | 16 | NA |
| 92 | 195.77 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 103 | 195.90 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 14 |
| 108 | 196.18 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 118 | 196.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 126 | 196.60 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 143 | 197.04 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 151 | 197.19 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 22 |
| 175 | 197.78 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 22 |
| 189 | 198.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 199 | 198.45 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 207 | 198.56 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 11 |
| 211 | 198.69 | radiation | 1 | 720 | > th | dose independent | rect. | 12 | 7 |
| 243 | 199.14 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 246 | 199.15 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 247 | 199.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 255 | 199.21 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 298 | 199.54 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 7 |
| 311 | 199.63 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 22 |
| 375 | 199.78 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 400 | 199.90 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 427 | 200.10 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 11 |
| 464 | 200.41 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 536 | 200.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 557 | 201.03 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 637 | 201.65 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 641 | 201.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 4 |
| 644 | 201.69 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 651 | 201.78 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 2 |
| 657 | 201.87 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 4 |
| 666 | 201.90 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 3 |
| 700 | 202.20 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 731 | 202.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 8 |
| 734 | 202.38 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 748 | 202.45 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 753 | 202.48 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 14 |
| 760 | 202.53 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 770 | 202.58 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 854 | 203.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 870 | 203.15 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 14 |
| 884 | 203.22 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 894 | 203.25 | radiation | 1 | 720 | < th | dose independent | rect. | 20 | 23 |
| 897 | 203.27 | humidity | 90 | 43200 | > th | dose independent | rect. | 21 | 3 |
| 898 | 203.27 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 923 | 203.35 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 934 | 203.41 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 986 | 203.45 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 13 |