Os01g0965400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase).
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Os01g0965400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Uridylate kinase (EC 2.7.4.-) (UK) (Uridine monophosphate kinase) (UMP kinase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.09 | 0.319 | 13.4 | -0.479 | 1.43 | -1.76 | 0.0731 | -0.246 | -0.113 | 15.2 | 30 | 97 | -- | -- |
| 46.16 | 0.316 | 13.4 | -0.507 | 1.43 | -1.75 | 0.147 | -- | -0.111 | 15.3 | 30.1 | 98 | -- | -- |
| 46.09 | 0.316 | 13.4 | -0.471 | 1.42 | -1.76 | -- | -0.303 | -0.11 | 15.2 | 30.05 | 98 | -- | -- |
| 46.21 | 0.317 | 13.4 | -0.519 | 1.43 | -1.76 | -- | -- | -0.12 | 15.2 | 30.15 | 99 | -- | -- |
| 124.62 | 0.52 | 13.4 | -0.856 | -- | -3.2 | -- | -0.461 | -0.418 | -- | 30.47 | 95 | -- | -- |
| 86.2 | 0.435 | 13.3 | -0.0957 | 2 | -- | 0.378 | -- | 0.215 | 15.2 | -- | -- | -- | -- |
| 86.66 | 0.436 | 13.3 | -0.088 | 2 | -- | -- | -- | 0.217 | 15.2 | -- | -- | -- | -- |
| 124.84 | 0.52 | 13.4 | -0.877 | -- | -3.16 | -- | -- | -0.386 | -- | 30.77 | 86 | -- | -- |
| 53.01 | 0.341 | 13.3 | -- | 1.52 | -1.5 | -- | -- | -0.0221 | 15.5 | 30.15 | 99 | -- | -- |
| 313.84 | 0.828 | 13.3 | -0.173 | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
| 86.86 | 0.436 | 13.3 | -- | 2 | -- | -- | -- | 0.226 | 15.2 | -- | -- | -- | -- |
| 144.18 | 0.559 | 13.4 | -- | -- | -2.96 | -- | -- | -0.229 | -- | 31.44 | 74 | -- | -- |
| 314.63 | 0.828 | 13.3 | -- | -- | -- | -- | -- | 0.184 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.25 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 3 | 34.69 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 11 | 36.21 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 34 | 39.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 20 |
| 126 | 44.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 128 | 44.68 | temperature | 30 | 90 | < th | dose dependent | sin | 3 | NA |
| 145 | 45.03 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 159 | 45.30 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 179 | 45.83 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 186 | 45.90 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 198 | 46.14 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 211 | 46.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 228 | 46.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 245 | 46.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 268 | 47.21 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 283 | 47.34 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 299 | 47.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 309 | 47.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 23 |
| 310 | 47.63 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 325 | 47.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 334 | 47.83 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 347 | 48.07 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 382 | 48.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 401 | 48.76 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 524 | 50.02 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 602 | 50.51 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |
| 621 | 50.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 718 | 51.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 858 | 52.09 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 894 | 52.26 | temperature | 10 | 720 | > th | dose dependent | rect. | 5 | 6 |