Os01g0965300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0965300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 339.73 | 0.866 | 3.25 | -0.031 | 0.591 | 1.06 | -0.357 | 1.53 | 1.89 | 18.5 | 24.68 | 780 | -- | -- |
| 341.59 | 0.861 | 3.23 | 0.22 | 0.611 | 0.979 | -0.748 | -- | 1.94 | 17.9 | 24.4 | 486 | -- | -- |
| 340.02 | 0.859 | 3.25 | -0.0415 | 0.591 | 1.08 | -- | 1.64 | 1.89 | 18.6 | 24.72 | 780 | -- | -- |
| 342.63 | 0.862 | 3.22 | 0.232 | 0.627 | 0.97 | -- | -- | 1.94 | 18 | 24.5 | 489 | -- | -- |
| 355.81 | 0.879 | 3.26 | -0.146 | -- | 0.99 | -- | 1.97 | 1.84 | -- | 25 | 1059 | -- | -- |
| 354.98 | 0.883 | 3.26 | -0.0268 | 0.539 | -- | -0.628 | -- | 1.76 | 17.7 | -- | -- | -- | -- |
| 355.95 | 0.884 | 3.26 | -0.0234 | 0.535 | -- | -- | -- | 1.75 | 17.7 | -- | -- | -- | -- |
| 360.63 | 0.884 | 3.21 | 0.201 | -- | 0.815 | -- | -- | 1.92 | -- | 25.12 | 1024 | -- | -- |
| 343.84 | 0.864 | 3.23 | -- | 0.613 | 0.864 | -- | -- | 1.9 | 18 | 24.41 | 489 | -- | -- |
| 370.8 | 0.9 | 3.25 | -0.0403 | -- | -- | -- | -- | 1.74 | -- | -- | -- | -- | -- |
| 355.96 | 0.883 | 3.26 | -- | 0.535 | -- | -- | -- | 1.76 | 17.7 | -- | -- | -- | -- |
| 361.55 | 0.886 | 3.22 | -- | -- | 0.725 | -- | -- | 1.88 | -- | 25.1 | 1010 | -- | -- |
| 370.84 | 0.899 | 3.25 | -- | -- | -- | -- | -- | 1.75 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 323.30 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 1 | 13 |
| 9 | 325.06 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 3 | 11 |
| 17 | 325.40 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 24 | 18 |
| 27 | 325.93 | precipitation | 0.1 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 28 | 325.93 | precipitation | 0.1 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 32 | 326.09 | temperature | 25.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 42 | 326.84 | wind | 3.0 | 270 | > th | dose independent | rect. | 24 | 8 |
| 58 | 327.41 | wind | 7.0 | 90 | > th | dose independent | rect. | 8 | 1 |
| 74 | 327.65 | wind | 7.0 | 90 | > th | dose dependent | rect. | 8 | 1 |
| 81 | 327.96 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 2 | 1 |
| 85 | 328.18 | temperature | 30.0 | 720 | > th | dose independent | rect. | 13 | 1 |
| 94 | 328.40 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 21 | 1 |
| 95 | 328.40 | wind | 3.0 | 270 | > th | dose independent | rect. | 1 | 5 |
| 107 | 328.67 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 23 | 8 |
| 114 | 328.77 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 7 |
| 130 | 329.16 | wind | 7.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 136 | 329.30 | wind | 3.0 | 270 | > th | dose independent | rect. | 1 | 2 |
| 151 | 329.49 | wind | 3.0 | 270 | > th | dose dependent | rect. | 24 | 8 |
| 164 | 329.91 | temperature | 30.0 | 30 | < th | dose independent | rect. | 7 | 23 |
| 197 | 330.85 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 209 | 331.10 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 24 | 4 |
| 228 | 331.40 | wind | 3.0 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 252 | 331.90 | precipitation | 0.1 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 255 | 331.92 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 268 | 332.01 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 2 | 22 |
| 274 | 332.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 284 | 332.38 | atmosphere | 1005.0 | 90 | < th | dose independent | rect. | 24 | 8 |
| 290 | 332.48 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 2 | 14 |
| 306 | 332.65 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 310 | 332.73 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 12 |
| 318 | 332.80 | temperature | 10.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 351 | 333.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 358 | 333.27 | wind | 3.0 | 720 | < th | dose independent | rect. | 12 | 1 |
| 369 | 333.41 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 383 | 333.52 | wind | 3.0 | 1440 | < th | dose independent | rect. | 24 | 1 |
| 396 | 333.62 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 5 |
| 403 | 333.68 | wind | 3.0 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 413 | 333.74 | humidity | 50.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 422 | 333.81 | wind | 3.0 | 1440 | < th | dose independent | rect. | 24 | 3 |
| 424 | 333.81 | temperature | 30.0 | 720 | > th | dose independent | rect. | 18 | 20 |
| 435 | 333.86 | temperature | 25.0 | 90 | > th | dose independent | rect. | 1 | 1 |
| 471 | 334.06 | temperature | 30.0 | 30 | < th | dose independent | rect. | 16 | 14 |
| 473 | 334.07 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 9 | 2 |
| 487 | 334.19 | wind | 5.0 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 488 | 334.19 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 556 | 334.59 | temperature | 10.0 | 10 | > th | dose dependent | sin | 4 | NA |
| 580 | 334.73 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 595 | 334.85 | wind | 3.0 | 1440 | < th | dose independent | rect. | 2 | 1 |
| 605 | 334.90 | wind | 1.0 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 611 | 334.94 | radiation | 30.0 | 720 | > th | dose independent | rect. | 14 | 1 |
| 636 | 335.02 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 7 | 23 |
| 644 | 335.05 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 652 | 335.09 | wind | 5.0 | 1440 | < th | dose dependent | rect. | 24 | 3 |
| 664 | 335.15 | wind | 3.0 | 1440 | > th | dose independent | rect. | 2 | 1 |
| 727 | 335.44 | wind | 3.0 | 90 | > th | dose independent | rect. | 4 | 1 |
| 817 | 335.73 | wind | 9.0 | 1440 | < th | dose dependent | rect. | 23 | 6 |
| 834 | 335.80 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 2 | 11 |
| 837 | 335.82 | temperature | 25.0 | 720 | > th | dose dependent | sin | 2 | NA |
| 851 | 335.87 | temperature | 15.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 890 | 336.02 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 902 | 336.06 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 966 | 336.29 | wind | 9.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 968 | 336.29 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 7 | 1 |
| 974 | 336.30 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 984 | 336.34 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 7 |
| 995 | 336.37 | wind | 1.0 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 1000 | 336.38 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 6 | 3 |