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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0963800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0403) R2 : 0.00662
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.148 (0.0849) R2dN8 : 0.00854 R2N8 : 0.00662
σ : 0.759
deviance : 264.67
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.39 0.727 2.94 1.07 0.444 0.28 0.131 -6.85 0.294 10.4 29.9 4258 -- --
244.36 0.728 3.12 -0.271 0.363 -0.462 -0.256 -- -0.0279 10.6 30.31 34513 -- --
239.46 0.721 2.94 1.07 0.443 0.28 -- -6.84 0.294 10.3 29.88 4257 -- --
240.35 0.722 3.13 -0.187 0.488 -0.518 -- -- -0.0228 10.3 30.3 20628 -- --
251.4 0.738 2.96 1.07 -- 0.323 -- -6.85 0.287 -- 29.9 4254 -- --
253.69 0.747 3.1 -0.0195 0.428 -- 0.0416 -- 0.145 9.89 -- -- -- --
253.7 0.746 3.1 -0.018 0.428 -- -- -- 0.145 9.87 -- -- -- --
250.66 0.737 3.16 -0.202 -- -0.694 -- -- -0.11 -- 30.3 18983 -- --
241.28 0.723 3.14 -- 0.443 -0.612 -- -- -0.0738 10.1 30.61 20592 -- --
264.65 0.76 3.11 -0.0226 -- -- -- -- 0.145 -- -- -- -- --
253.7 0.745 3.1 -- 0.428 -- -- -- 0.147 9.88 -- -- -- --
252.36 0.74 3.17 -- -- -0.595 -- -- -0.106 -- 30.4 18810 -- --
264.67 0.759 3.11 -- -- -- -- -- 0.148 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 229.57 wind 5 10 > th dose independent rect. 15 1
3 231.21 wind 3 10 > th dose dependent rect. 15 1
4 231.87 atmosphere 1000 720 > th dose independent rect. 23 5
5 231.90 atmosphere 1000 90 < th dose independent rect. 24 15
14 232.19 atmosphere 1005 10 < th dose dependent rect. 24 10
22 232.44 atmosphere 1000 270 > th dose independent rect. 23 13
30 232.82 atmosphere 1000 270 < th dose independent rect. 22 16
31 232.84 atmosphere 1000 10 > th dose independent rect. 24 15
34 233.08 atmosphere 1000 10 < th dose independent sin 5 NA
36 233.11 atmosphere 1000 90 < th dose independent rect. 24 11
40 233.17 atmosphere 1000 10 < th dose independent rect. 24 10
45 233.22 temperature 25 4320 > th dose independent rect. 24 3
52 233.27 atmosphere 1005 90 < th dose dependent rect. 24 16
53 233.28 atmosphere 1000 720 < th dose independent rect. 23 3
56 233.29 temperature 30 1440 < th dose independent rect. 22 14
57 233.31 atmosphere 1005 10 < th dose dependent rect. 24 17
58 233.32 temperature 25 4320 > th dose dependent rect. 24 1
65 233.34 temperature 25 4320 > th dose independent rect. 1 1
68 233.36 temperature 30 1440 < th dose independent rect. 9 3
77 233.42 temperature 30 1440 < th dose independent rect. 7 5
85 233.48 temperature 30 1440 < th dose independent rect. 4 8
90 233.53 atmosphere 1000 720 < th dose independent rect. 24 1
97 233.56 atmosphere 1000 270 < th dose independent sin 7 NA
110 233.65 atmosphere 1000 30 > th dose independent rect. 7 23
115 233.69 atmosphere 1000 720 < th dose independent rect. 20 12
122 233.76 temperature 30 1440 > th dose independent rect. 10 2
124 233.76 atmosphere 1000 270 < th dose independent rect. 22 11
156 234.00 atmosphere 1000 720 < th dose independent rect. 21 8
208 234.26 atmosphere 995 10 > th dose dependent rect. 24 15
213 234.30 atmosphere 1000 30 > th dose independent rect. 16 23
215 234.33 atmosphere 1005 90 < th dose dependent sin 5 NA
258 234.52 temperature 25 4320 < th dose independent rect. 3 1
262 234.52 temperature 25 4320 > th dose dependent rect. 23 8
291 234.71 atmosphere 995 270 > th dose dependent rect. 23 13
292 234.72 atmosphere 1005 270 < th dose dependent rect. 22 11
299 234.75 temperature 25 4320 > th dose independent rect. 23 9
317 234.85 atmosphere 1005 270 < th dose dependent rect. 22 15
322 234.88 atmosphere 1000 30 > th dose independent sin 4 NA
359 235.02 atmosphere 1000 720 > th dose independent rect. 17 11
372 235.08 temperature 25 4320 < th dose independent rect. 24 8
416 235.29 temperature 20 720 > th dose dependent rect. 5 2
425 235.35 atmosphere 1000 270 > th dose independent sin 8 NA
455 235.47 temperature 30 1440 < th dose independent sin 8 NA
467 235.52 temperature 30 1440 > th dose independent sin 8 NA
491 235.61 temperature 25 4320 < th dose independent rect. 1 1
531 235.72 atmosphere 995 10 > th dose dependent rect. 2 13
635 236.03 atmosphere 1000 10 > th dose independent sin 6 NA
726 236.20 temperature 25 720 > th dose independent rect. 6 1
782 236.38 atmosphere 1000 720 > th dose independent rect. 18 16
901 236.68 atmosphere 995 720 > th dose dependent rect. 1 3
944 236.82 temperature 30 14400 < th dose independent rect. 19 14
971 236.88 atmosphere 1000 270 > th dose independent rect. 16 20
972 236.89 temperature 30 14400 < th dose independent rect. 5 4
995 236.92 temperature 30 14400 < th dose independent rect. 8 1